Information for 10-GCTKTDAAAA (Motif 11)


Reverse Opposite:

p-value:1e-428
log p-value:-9.875e+02
Information Content per bp:1.459
Number of Target Sequences with motif35271.0
Percentage of Target Sequences with motif34.02%
Number of Background Sequences with motif28318.0
Percentage of Background Sequences with motif27.73%
Average Position of motif in Targets100.5 +/- 55.6bp
Average Position of motif in Background100.1 +/- 59.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GCTKTDAAAA--
--TTTGAAACCG

Rhox11/MA0629.1/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GCTKTDAAAA--
AAGACGCTGTAAAGCGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GCTKTDAAAA--
AAGACGCTGTAAAGCGA

PB0013.1_Eomes_1/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCTKTDAAAA--
GAAAAGGTGTGAAAATT

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCTKTDAAAA-
GNCTATAAAAGG

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCTKTDAAAA
-ATTTGAATT

PH0158.1_Rhox11_2/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GCTKTDAAAA--
AGGACGCTGTAAAGGGA

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GCTKTDAAAA-
AACTAGCTGTCAATAC

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTKTDAAAA
NGCTN------

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTKTDAAAA-
GCTCGTAAAAA