Information for 24-CGTTGCGATG (Motif 26)


Reverse Opposite:

p-value:1e-12
log p-value:-2.873e+01
Information Content per bp:1.937
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.03%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.8 +/- 51.6bp
Average Position of motif in Background148.6 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--CGTTGCGATG---
NNCGTTGCTATGGNN

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CGTTGCGATG---
NCCGTTGCTANGNGN

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CGTTGCGATG-
CTGTTGCTAGGS

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.73
Offset:-6
Orientation:reverse strand
Alignment:------CGTTGCGATG-------
NTNNNNNGTTGCTANGGNNCANA

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CGTTGCGATG-----
-GTTGCCATGGNAAC

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGTTGCGATG----
NGTTGCCATGGCAA

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGTTGCGATG----
GGTTGCCATGGCAA

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGTTGCGATG------
CGTTGCCATGGCAACG

RFX5/MA0510.2/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGTTGCGATG------
CGTTGCCATGGCAACG

RFX3/MA0798.1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGTTGCGATG------
CGTTGCCATGGCAACN