Information for 18-CTCTAAASTCCC (Motif 19)


Reverse Opposite:

p-value:1e-68
log p-value:-1.588e+02
Information Content per bp:1.868
Number of Target Sequences with motif103.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets91.7 +/- 46.8bp
Average Position of motif in Background81.0 +/- 45.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCTAAASTCCC----
GGCAAAAGTCCAATAA

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTCTAAASTCCC
--GGAAATTCCC

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCTAAASTCCC-----
TACGAGACTCCTCTAAC

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTCTAAASTCCC
--GGAAATTCCC

Crx/MA0467.1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CTCTAAASTCCC-
--CTAATCCTCTT

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CTCTAAASTCCC--
----GCATTCCAGN

MZF1/MA0056.1/Jaspar

Match Rank:7
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:CTCTAAASTCCC--
--------TCCCCA

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:8
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CTCTAAASTCCC
AGGTCTCTAACC----

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CTCTAAASTCCC
CCTTTGAWGT---

PB0136.1_IRC900814_2/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CTCTAAASTCCC----
ATGGAAAGTCGTAAAA