Information for 11-RRAGCCGGCT (Motif 12)


Reverse Opposite:

p-value:1e-391
log p-value:-9.008e+02
Information Content per bp:1.582
Number of Target Sequences with motif30534.0
Percentage of Target Sequences with motif29.45%
Number of Background Sequences with motif24222.4
Percentage of Background Sequences with motif23.72%
Average Position of motif in Targets100.2 +/- 55.9bp
Average Position of motif in Background99.9 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TFCP2/MA0145.3/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:RRAGCCGGCT-
-AAACCGGTTT

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:RRAGCCGGCT
-CAGCC----

GRHL1/MA0647.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RRAGCCGGCT--
AAAACCGGTTTT

SPDEF/MA0686.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:RRAGCCGGCT---
--ACCCGGATGTA

PB0077.1_Spdef_1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--RRAGCCGGCT----
AANNATCCGGATGTNN

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RRAGCCGGCT
ATAATCCC---

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-RRAGCCGGCT
CGGAGC-----

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RRAGCCGGCT
ACATCCTGNT

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RRAGCCGGCT----------
NAAACCGGTTNNAACCGGTT

PROX1/MA0794.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:RRAGCCGGCT--
TAAGGCGTCTTG