Information for 3-GCTGCCAA (Motif 4)


Reverse Opposite:

p-value:1e-879
log p-value:-2.025e+03
Information Content per bp:1.729
Number of Target Sequences with motif35852.0
Percentage of Target Sequences with motif34.58%
Number of Background Sequences with motif26221.7
Percentage of Background Sequences with motif25.67%
Average Position of motif in Targets100.1 +/- 55.6bp
Average Position of motif in Background99.9 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GCTGCCAA-
-TTGCCAAG

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GCTGCCAA-
CGTGCCAAG

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GCTGCCAA--
GGTGCCAAGT

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:GCTGCCAA
--TGCCAA

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GCTGCCAA
RHTGWCAR

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCTGCCAA--
-ATGCCAACC

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GCTGCCAA-
VGCTGWCAVB

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCCAA
ARNTGACA-

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GCTGCCAA
GCTGTCAA

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCTGCCAA
CCTGTCAA