Information for 6-RVARDCWGYN (Motif 5)


Reverse Opposite:

p-value:1e-859
log p-value:-1.980e+03
Information Content per bp:1.576
Number of Target Sequences with motif62531.0
Percentage of Target Sequences with motif60.31%
Number of Background Sequences with motif51672.0
Percentage of Background Sequences with motif50.59%
Average Position of motif in Targets100.0 +/- 55.3bp
Average Position of motif in Background100.5 +/- 63.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.77
Offset:4
Orientation:forward strand
Alignment:RVARDCWGYN
----GCTGTG

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:RVARDCWGYN
--CAGCTGNT

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:RVARDCWGYN--
AGCAGCTGCTNN

Ascl2/MA0816.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:RVARDCWGYN
AGCAGCTGCT

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:RVARDCWGYN-
-NCAGCTGCTG

Tcf12/MA0521.1/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-RVARDCWGYN
NNGCAGCTGTT

Myog/MA0500.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-RVARDCWGYN
NNGCAGCTGTC

Myod1/MA0499.1/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:RVARDCWGYN---
TGCAGCTGTCCCT

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-RVARDCWGYN
NNACAGCTGC-

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:RVARDCWGYN
--CAGCTGTT