# Parameters
data_name = "Lef1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Lef1: #4
| Cell type | Modisco | Homer |
|---|---|---|
| ISP;A;CL |
Significance: 3.9221e-06 |
Significance: 0.0382992 |
| ES;E14;A;CL |
Significance: 0.0251102 |
Significance: 0.0101831 |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.0317892 |
Significance: 0.0166305 |
| ENDRM_ESD;A;GEO |
Significance: 0.00580466 |
Significance: 0.00535713 |
Unique Cell types only TF-MoDISco finds Lef1: #67
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.0549586 | Absent |
| naiveCD8;A;CL |
Significance: 9.63546e-06 | Absent |
| memT;CD4+;A;CL |
Significance: 1.39211e-05 | Absent |
| wES;limb;E11.5;D;En |
Significance: 1.9218999999999998e-08 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.054687400000000004 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0337444 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.00529201 | Absent |
| aNonTfh;A;CL |
Significance: 0.049058 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 1.22067e-06 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.000421835 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 4.43717e-08 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.0263788 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00119393 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 5.61492e-06 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 2.05222e-06 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 3.2159199999999997e-06 | Absent |
| DP3b;A;CL |
Significance: 3.81298e-07 | Absent |
| placenta;A;CL |
Significance: 0.0372886 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.00321132 | Absent |
| ES;J1;A;CL |
Significance: 0.0368573 | Absent |
| ES;E14;A;GEO |
Significance: 0.0309372 | Absent |
| ES;F1216;A;GEO |
Significance: 0.0406816 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.030416200000000004 | Absent |
| ES;v6.5;A;GEO |
Significance: 0.0226752 | Absent |
| iNKT;A;GEO |
Significance: 0.0468047 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0226635 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0200703 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.021089300000000002 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.023253700000000002 | Absent |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 0.0169918 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.0224196 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0327664 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.0334856 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.0195718 | Absent |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.0192572 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.00946596 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0314126 | Absent |
| BCK_SKN;A;GEO |
Significance: 2.50432e-05 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.024550799999999998 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.0203435 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.0133885 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.00361921 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.027056200000000002 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.0216268 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.05777480000000001 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.00191756 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.0403566 | Absent |
| ES;ZhBTc4;2;D;GEO |
Significance: 0.0304483 | Absent |
| ES;D0;D;GEO |
Significance: 7.47914e-05 | Absent |
| apCD4Eff;D;GEO |
Significance: 2.22035e-06 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.0412411 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.018874099999999998 | Absent |
| ES;E14;D;En |
Significance: 0.020455200000000003 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.039163699999999996 | Absent |
| KDNY;P0;D;En |
Significance: 0.0292539 | Absent |
| Adipose;D;En |
Significance: 0.0557916 | Absent |
| wES;RTN;E11.5;D;En |
Significance: 0.030324 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.0567341 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.037714599999999994 | Absent |
| Fr_BRN;P0;D;En |
Significance: 0.043057599999999994 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 0.0187926 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.0363779 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.0255255 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 0.016317500000000002 | Absent |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.0369315 | Absent |
| Md_BRN;D;En |
Significance: 0.0183767 | Absent |
| wES;WHL_BRN;E14.5;D;En |
Significance: 0.0598275 | Absent |
Unique Cell types only Homer finds Lef1: #2
| Cell type | Modisco | Homer |
|---|---|---|
| NPC;F129;A;GEO | Absent |
Significance: 0.0596447 |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL | Absent |
Significance: 0.0348726 |
