Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/DMSO_2_S32_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4239
Total background sequences = 20416
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-216	-4.991e+02	25.43%	8.94%	327.5bp (218.7bp)	REB1(MacIsaac)/Yeast(0.994) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-96	-2.223e+02	39.99%	25.31%	344.1bp (243.4bp)	RSC3/MA0374.1/Jaspar(0.932) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-77	-1.795e+02	40.10%	26.80%	318.3bp (206.9bp)	PB0182.1_Srf_2/Jaspar(0.898) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-72	-1.663e+02	38.03%	25.42%	400.8bp (250.1bp)	RAP2-10/MA0980.1/Jaspar(0.757) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-45	-1.041e+02	31.92%	22.43%	329.7bp (254.9bp)	TDA9/MA0431.1/Jaspar(0.810) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-36	-8.425e+01	27.74%	19.63%	352.8bp (220.3bp)	SPL5/MA1059.1/Jaspar(0.748) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-32	-7.453e+01	45.60%	36.64%	375.3bp (206.5bp)	MOT2/MA0379.1/Jaspar(0.847) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-29	-6.832e+01	8.63%	4.55%	353.4bp (196.9bp)	TOD6?/SacCer-Promoters/Homer(0.947) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-25	-5.814e+01	24.20%	17.79%	363.8bp (233.9bp)	IME1/MA0320.1/Jaspar(0.885) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-21	-5.059e+01	2.81%	0.99%	294.4bp (250.7bp)	PB0114.1_Egr1_2/Jaspar(0.732) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-21	-5.026e+01	15.50%	10.62%	283.8bp (184.6bp)	cad/dmmpmm(Down)/fly(0.858) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-19	-4.486e+01	11.51%	7.54%	358.9bp (232.9bp)	Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer(0.708) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-17	-4.112e+01	2.78%	1.11%	358.9bp (204.8bp)	SWI4(MacIsaac)/Yeast(0.770) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-17	-4.103e+01	14.91%	10.57%	382.7bp (210.8bp)	STP4/MA0397.1/Jaspar(0.718) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-16	-3.809e+01	6.04%	3.45%	426.6bp (240.8bp)	DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer(0.764) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-16	-3.732e+01	22.32%	17.33%	351.4bp (213.7bp)	MSN4(MacIsaac)/Yeast(0.833) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-14	-3.369e+01	5.14%	2.90%	341.9bp (202.5bp)	RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast(0.893) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-14	-3.346e+01	4.27%	2.27%	270.9bp (199.5bp)	TRB2/MA1073.1/Jaspar(0.784) More Information \| Similar Motifs Found	motif file (matrix)
19 *		1e-10	-2.369e+01	43.34%	38.46%	342.3bp (195.7bp)	PEND/MA0127.1/Jaspar(0.801) More Information \| Similar Motifs Found	motif file (matrix)