Information for 16-GCAGAGCG (Motif 12)


Reverse Opposite:

p-value:1e-19
log p-value:-4.486e+01
Information Content per bp:1.773
Number of Target Sequences with motif488.0
Percentage of Target Sequences with motif11.51%
Number of Background Sequences with motif1538.0
Percentage of Background Sequences with motif7.54%
Average Position of motif in Targets450.1 +/- 358.9bp
Average Position of motif in Background279.4 +/- 232.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCAGAGCG
RGAGAGAG

Trl/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAGAGCG---
-GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCAGAGCG---
-GAGAGAGCAA

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------GCAGAGCG---
NNNANTGCAGTGCNNTT

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAGAGCG--
GGCTCAGCGCG

CDC5/MA0579.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAGAGCG--
GGCTCAGCGCG

z/dmmpmm(Down)/fly

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCAGAGCG
--TGAGTG

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCAGAGCG-
GCCGCGCAGTGCGT

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCAGAGCG
---CAGCC

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAGAGCG
CCAGGAACAG--