Information for 2-NNCRCGCG (Motif 2)


Reverse Opposite:

p-value:1e-96
log p-value:-2.223e+02
Information Content per bp:1.574
Number of Target Sequences with motif1695.0
Percentage of Target Sequences with motif39.99%
Number of Background Sequences with motif5165.1
Percentage of Background Sequences with motif25.31%
Average Position of motif in Targets444.7 +/- 344.1bp
Average Position of motif in Background279.0 +/- 243.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.59
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RSC3/MA0374.1/Jaspar

Match Rank:1
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:NNCRCGCG
-NNGCGCG

MBP1/MA0329.1/Jaspar

Match Rank:2
Score:0.92
Offset:3
Orientation:forward strand
Alignment:NNCRCGCG--
---ACGCGTA

Tcfl5/MA0632.1/Jaspar

Match Rank:3
Score:0.88
Offset:0
Orientation:forward strand
Alignment:NNCRCGCG--
GGCACGTGCC

RSC30/MA0375.1/Jaspar

Match Rank:4
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:NNCRCGCG--
--CGCGCGCG

Hes1/MA1099.1/Jaspar

Match Rank:5
Score:0.85
Offset:0
Orientation:forward strand
Alignment:NNCRCGCG--
GGCACGCGTC

CMTA2/MA0969.1/Jaspar

Match Rank:6
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:NNCRCGCG----
---ACGCGGNNN

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:7
Score:0.83
Offset:3
Orientation:reverse strand
Alignment:NNCRCGCG---
---GCGCGCTA

CMTA3/MA0970.1/Jaspar

Match Rank:8
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:NNCRCGCG-
NNNACGCGG

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:9
Score:0.82
Offset:0
Orientation:forward strand
Alignment:NNCRCGCG----
HHCACGCGCBTN

MBP1::SWI6/MA0330.1/Jaspar

Match Rank:10
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:NNCRCGCG-
--AACGCGT