Information for 10-GMGATGAG (Motif 8)


Reverse Opposite:

p-value:1e-29
log p-value:-6.832e+01
Information Content per bp:1.932
Number of Target Sequences with motif366.0
Percentage of Target Sequences with motif8.63%
Number of Background Sequences with motif928.3
Percentage of Background Sequences with motif4.55%
Average Position of motif in Targets384.4 +/- 353.4bp
Average Position of motif in Background289.1 +/- 196.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TOD6?/SacCer-Promoters/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:GMGATGAG--
GCGATGAGMT

TOD6/MA0350.1/Jaspar

Match Rank:2
Score:0.88
Offset:-5
Orientation:reverse strand
Alignment:-----GMGATGAG--------
NNANNGCGATGAGCTNNNNNN

DOT6/MA0351.1/Jaspar

Match Rank:3
Score:0.87
Offset:-5
Orientation:reverse strand
Alignment:-----GMGATGAG--------
ANGANGCGATGAGGTGCNNNN

CHA4(MacIsaac)/Yeast

Match Rank:4
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GMGATGAG
TGCGATGAG

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GMGATGAG--
CGCGCTGAGCN

CDC5/MA0579.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GMGATGAG--
CGCGCTGAGCN

GAT1/GAT1_RAPA/1-GZF3,2-GLN3(Harbison)/Yeast

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GMGATGAG
-AGATAAG

GAT1(MacIsaac)/Yeast

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GMGATGAG
-AGATAAG

GZF3/Literature(Harbison)/Yeast

Match Rank:9
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GMGATGAG
--GATAAG

GZF3(MacIsaac)/Yeast

Match Rank:10
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GMGATGAG
--GATAAG