Information for 8-TGCACGGC (Motif 6)


Reverse Opposite:

p-value:1e-36
log p-value:-8.425e+01
Information Content per bp:1.619
Number of Target Sequences with motif1176.0
Percentage of Target Sequences with motif27.74%
Number of Background Sequences with motif4005.3
Percentage of Background Sequences with motif19.63%
Average Position of motif in Targets436.0 +/- 352.8bp
Average Position of motif in Background282.1 +/- 220.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SPL5/MA1059.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGC
TTGTACGGC

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.75
Offset:-6
Orientation:reverse strand
Alignment:------TGCACGGC-----
CCCTNCTGTACGGACGNNA

SPL14/MA0586.1/Jaspar

Match Rank:3
Score:0.75
Offset:-6
Orientation:reverse strand
Alignment:------TGCACGGC-----
CCCTNCTGTACGGACGNNA

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TGCACGGC-
-GCACGTNC

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TGCACGGC-
-GCACGTAY

SPL12/MA1057.1/Jaspar

Match Rank:6
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGCACGGC
TGTACGGT

POPTR_0002s00440g/MA0955.1/Jaspar

Match Rank:7
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TGCACGGC
GGTACGG-

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGCACGGC
BGCACGTA

FHL1(MacIsaac)/Yeast

Match Rank:9
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGC-
ATGTACGGAT

AtLEC2(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:10
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGCACGGC
TTTGCATGGA