Homer de novo Motif Results (/srv/scratch/imk1/TFBindingPredictionProject/MouseMutantData/indivRep_allPeaks-pr1.IDR0.05.ZF9vsWT.HomerResults//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 40510
Total background sequences = 74525
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-1514	-3.488e+03	17.59%	3.11%	64.1bp (138.2bp)	CTCF/MA0139.1/Jaspar(0.679) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-1231	-2.835e+03	18.72%	4.67%	104.2bp (184.7bp)	Ddit3::Cebpa/MA0019.1/Jaspar(0.817) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-739	-1.702e+03	37.04%	20.95%	86.9bp (133.9bp)	CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer(0.871) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-472	-1.088e+03	7.76%	1.96%	84.8bp (195.3bp)	GFY(?)/Promoter/Homer(0.625) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-345	-7.962e+02	10.08%	4.02%	113.3bp (188.1bp)	Stat6/MA0520.1/Jaspar(0.629) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-323	-7.449e+02	9.24%	3.63%	103.4bp (196.4bp)	GCM1/MA0646.1/Jaspar(0.645) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-283	-6.520e+02	7.46%	2.76%	91.9bp (198.7bp)	STAT3/MA0144.2/Jaspar(0.745) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-248	-5.732e+02	8.78%	3.87%	100.1bp (208.5bp)	unc-86/MA0926.1/Jaspar(0.733) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-203	-4.683e+02	4.02%	1.19%	90.6bp (190.9bp)	PB0026.1_Gm397_1/Jaspar(0.722) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-201	-4.634e+02	4.52%	1.48%	102.5bp (195.6bp)	Tal1(0.673) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-190	-4.397e+02	4.41%	1.48%	108.5bp (187.9bp)	SOK2(MacIsaac)/Yeast(0.710) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-165	-3.820e+02	3.82%	1.27%	102.9bp (188.9bp)	PB0099.1_Zfp691_1/Jaspar(0.701) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-154	-3.566e+02	4.38%	1.68%	87.5bp (191.6bp)	PB0120.1_Foxj1_2/Jaspar(0.656) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-151	-3.489e+02	6.78%	3.32%	78.4bp (177.7bp)	PHD1/MA0355.1/Jaspar(0.564) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-149	-3.438e+02	14.71%	9.52%	97.0bp (174.4bp)	PB0133.1_Hic1_2/Jaspar(0.818) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-136	-3.139e+02	4.48%	1.88%	101.6bp (208.2bp)	Twist2/MA0633.1/Jaspar(0.770) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-113	-2.611e+02	11.39%	7.36%	119.2bp (185.1bp)	pros/dmmpmm(Bergman)/fly(0.621) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-90	-2.088e+02	3.67%	1.71%	121.2bp (187.2bp)	Mef2/dmmpmm(Papatsenko)/fly(0.827) More Information \| Similar Motifs Found	motif file (matrix)
19		1e-78	-1.818e+02	2.07%	0.75%	114.9bp (200.2bp)	PB0033.1_Irf3_1/Jaspar(0.703) More Information \| Similar Motifs Found	motif file (matrix)
20		1e-16	-3.738e+01	3.34%	2.49%	114.4bp (191.0bp)	Hand1::Tcf3/MA0092.1/Jaspar(0.714) More Information \| Similar Motifs Found	motif file (matrix)
21		1e-12	-2.820e+01	2.74%	2.07%	149.5bp (92.7bp)	RDS1/MA0361.1/Jaspar(0.846) More Information \| Similar Motifs Found	motif file (matrix)