Information for 20-TCTGGTCT (Motif 20)


Reverse Opposite:

p-value:1e-16
log p-value:-3.738e+01
Information Content per bp:1.530
Number of Target Sequences with motif1353.0
Percentage of Target Sequences with motif3.34%
Number of Background Sequences with motif1853.9
Percentage of Background Sequences with motif2.49%
Average Position of motif in Targets188.1 +/- 114.4bp
Average Position of motif in Background237.8 +/- 191.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TCTGGTCT
GGTCTGGCAT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TCTGGTCT-
NNHTGTGGTTWN

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------TCTGGTCT--
NNTNNTGTCTGGNNTNG

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCTGGTCT-
CTGTGGTTTN

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCTGGTCT
GTCTGTGGTTT

sma-4/MA0925.1/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TCTGGTCT
AGTGTCTGGAC-

ACE2/ACE2_YPD/2-SWI5(Harbison)/Yeast

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCTGGTCT
TGCTGGT--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TCTGGTCT
VBSYGTCTGG---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCTGGTCT
CTGTCTGG---

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCTGGTCT
GCTGTGGTTT