Information for 1-GGCCAGAAGAGG (Motif 1)


Reverse Opposite:

p-value:1e-1514
log p-value:-3.488e+03
Information Content per bp:1.903
Number of Target Sequences with motif7126.0
Percentage of Target Sequences with motif17.59%
Number of Background Sequences with motif2321.7
Percentage of Background Sequences with motif3.11%
Average Position of motif in Targets163.9 +/- 64.1bp
Average Position of motif in Background187.7 +/- 138.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGCCAGAAGAGG------
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGCCAGAAGAGG-------
TGGCCACCAGGTGGCACTNT

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGCCAGAAGAGG---------
-GCCASCAGGGGGCGCYVNNG

SEP3/MA0563.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGCCAGAAGAGG-
--CCAAAAATGGA

ELK4/MA0076.2/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGCCAGAAGAGG
-NCCGGAAGTGG

Gabpa/MA0062.2/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGCCAGAAGAGG-
--CCGGAAGTGGC

Dip3/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCCAGAAGAGG
GGNANGGNGTGG

PI/MA0559.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGCCAGAAGAGG----
--CCAAAAAAGGAAAA

SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGCCAGAAGAGG
--CCAAAAAGGG

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCCAGAAGAGG---
GGTCANYTGAGGWCA