Information for 21-CTGGAGAGATGG (Motif 17)


Reverse Opposite:

p-value:1e-113
log p-value:-2.611e+02
Information Content per bp:1.694
Number of Target Sequences with motif4613.0
Percentage of Target Sequences with motif11.39%
Number of Background Sequences with motif5487.5
Percentage of Background Sequences with motif7.36%
Average Position of motif in Targets178.6 +/- 119.2bp
Average Position of motif in Background206.1 +/- 185.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

pros/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTGGAGAGATGG
----AGNCATG-

SeqBias: GA-repeat

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTGGAGAGATGG-
---GAGAGAGAGA

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTGGAGAGATGG
--RGAGAGAG--

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTGGAGAGATGG-
---AACAGATGGC

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTGGAGAGATGG-----
NNCCTGNAAAAAAAAAAAAA

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTGGAGAGATGG-----
NNCCTGNAAAAAAAAAAAAA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGGAGAGATGG
CTYRAGTGSY--

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGGAGAGATGG
BTBRAGTGSN--

Bcl6/MA0463.1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CTGGAGAGATGG
TTTCCTAGAAAGCA--

Trl/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTGGAGAGATGG
-GAGAGAGCAA-