Information for 18-GTTGTGAGCTGC (Motif 13)


Reverse Opposite:

p-value:1e-154
log p-value:-3.566e+02
Information Content per bp:1.706
Number of Target Sequences with motif1774.0
Percentage of Target Sequences with motif4.38%
Number of Background Sequences with motif1252.1
Percentage of Background Sequences with motif1.68%
Average Position of motif in Targets168.2 +/- 87.5bp
Average Position of motif in Background226.4 +/- 191.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGTGAGCTGC
GTNTTGTTGTGANNT--

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GTTGTGAGCTGC-
NNNNTTGTGTGCTTNN

MGA/MA0801.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTTGTGAGCTGC
AGGTGTGA-----

TBX1/MA0805.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTTGTGAGCTGC
AGGTGTGA-----

TBX15/MA0803.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTTGTGAGCTGC
AGGTGTGA-----

HMG-1/MA0044.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTTGTGAGCTGC
GTTGTACTC---

RTG3/Literature(Harbison)/Yeast

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTTGTGAGCTGC
---GTGACC---

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GTTGTGAGCTGC-
NNGCGTGTGTGCNGCN

TBX4/MA0806.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTTGTGAGCTGC
AGGTGTGA-----

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GTTGTGAGCTGC
---GTGACCTT-