Homer de novo Motif Results (homer_Sox2_123b_1_ppr.IDR0.05.filt.narrowPeak//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 9398
Total background sequences = 40415
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A G C T C G A T A T C G C G A T G C A T G C T A C G A T C A T G A G T C G C T A C T G A C G T A 1e-300-6.912e+023.18%0.13%3.0bp (3.1bp)Pou5f1::Sox2/MA0142.1/Jaspar(0.935)
More Information | Similar Motifs Found		motif file (matrix)
2 A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T 1e-277-6.399e+027.07%1.22%4.2bp (4.6bp)Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer(0.957)
More Information | Similar Motifs Found		motif file (matrix)
3 C T G A C T A G C G T A C G A T A T C G C T A G T G C A A C G T A G T C A C G T C T A G A C G T 1e-64-1.485e+020.38%0.00%3.0bp (2.1bp)HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer(0.591)
More Information | Similar Motifs Found		motif file (matrix)
4 A C G T C T G A A G T C A C G T G A C T C T G A C T A G A C T G C G T A G T A C C G T A G C T A 1e-49-1.138e+020.31%0.00%3.1bp (0.4bp)STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer(0.605)
More Information | Similar Motifs Found		motif file (matrix)
5 A C T G C T A G A C G T A C G T A C T G G T C A T A C G A G T C A G T C A C G T A T G C T G A C 1e-47-1.089e+020.30%0.00%3.1bp (2.3bp)ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer(0.627)
More Information | Similar Motifs Found		motif file (matrix)
6 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G 1e-47-1.089e+020.30%0.00%2.8bp (3.3bp)PB0205.1_Zic1_2/Jaspar(0.871)
More Information | Similar Motifs Found		motif file (matrix)
7 G C A T A T C G T G C A T G C A G C A T T C G A T A C G T G A C 1e-40-9.225e+014.16%1.97%4.1bp (4.2bp)PB0178.1_Sox8_2/Jaspar(0.720)
More Information | Similar Motifs Found		motif file (matrix)
8 G T A C G A T C G A C T G T C A T A C G C T A G A C G T C G T A C T G A C G A T 1e-38-8.834e+010.35%0.01%3.4bp (1.2bp)Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer(0.686)
More Information | Similar Motifs Found		motif file (matrix)
9 C G T A A G C T A C G T C T A G A C G T T A C G G C A T T G C A A C G T A C G T A G T C G T A C 1e-37-8.567e+010.29%0.01%2.6bp (0.4bp)FOXH1/MA0479.1/Jaspar(0.704)
More Information | Similar Motifs Found		motif file (matrix)
10 A G T C G T A C G A T C C A G T A C T G C T G A A C T G G T A C A G C T C G T A G A C T A C G T 1e-37-8.567e+010.29%0.01%2.6bp (2.7bp)POL013.1_MED-1/Jaspar(0.598)
More Information | Similar Motifs Found		motif file (matrix)
11 C G T A A C T G A C T G C G T A C T A G C T G A A C G T A G C T C G T A A G T C A G T C A C G T 1e-33-7.622e+010.22%0.00%2.6bp (0.4bp)NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer(0.715)
More Information | Similar Motifs Found		motif file (matrix)
12 C T A G A C T G T A C G A C G T A C G T C G A T C G T A A T G C A G T C G T C A A C G T C T A G 1e-31-7.172e+010.21%0.00%2.8bp (0.0bp)NFAT5/MA0606.1/Jaspar(0.649)
More Information | Similar Motifs Found		motif file (matrix)
13 C A G T A T C G A G T C A C G T C G T A G A T C C G A T A T C G A C G T A G T C A G T C A C G T 1e-29-6.740e+010.29%0.01%3.2bp (1.1bp)PB0051.1_Osr2_1/Jaspar(0.738)
More Information | Similar Motifs Found		motif file (matrix)
14 A G T C A G C T A T G C A G T C G T C A C T G A A C T G C T G A A G T C G T C A A G T C C G A T 1e-29-6.726e+010.20%0.00%2.7bp (0.0bp)Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer(0.561)
More Information | Similar Motifs Found		motif file (matrix)
15 A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T 1e-28-6.574e+010.23%0.01%3.2bp (2.5bp)Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer(0.658)
More Information | Similar Motifs Found		motif file (matrix)
16 A C G T C A T G A C T G C G T A G T A C A G C T C A G T A G T C A C G T A G T C A G T C C G T A 1e-27-6.286e+010.19%0.00%2.6bp (0.4bp)PB0134.1_Hnf4a_2/Jaspar(0.617)
More Information | Similar Motifs Found		motif file (matrix)
17 A C G T A C G T C G T A A G T C A G T C A G T C C G T A C G T A C G T A A G T C C G T A C G T A 1e-25-5.851e+010.18%0.00%3.0bp (0.0bp)PB0121.1_Foxj3_2/Jaspar(0.719)
More Information | Similar Motifs Found		motif file (matrix)
18 C T G A T C A G T C G A T G A C G C A T C T G A A C T G T A G C G A T C G A T C C G A T A C T G 1e-25-5.851e+010.18%0.00%2.9bp (0.0bp)ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer(0.612)
More Information | Similar Motifs Found		motif file (matrix)
19 A C T G C T A G C T A G A T C G A G T C A C G T C A T G T G C A A C G T G A C T 1e-23-5.431e+010.20%0.01%2.9bp (5.2bp)POL010.1_DCE_S_III/Jaspar(0.639)
More Information | Similar Motifs Found		motif file (matrix)
20 C G T A G T C A C G T A G T C A A C T G T C A G A G C T A C G T A G T C A C G T C G A T G A C T 1e-21-4.998e+010.16%0.00%2.1bp (0.0bp)SD0003.1_at_AC_acceptor/Jaspar(0.514)
More Information | Similar Motifs Found		motif file (matrix)
21 C T G A A C T G A C G T C G T A A G T C A G T C A G C T A C G T A C T G C G T A 1e-20-4.737e+010.27%0.02%3.5bp (4.0bp)Esrra/MA0592.2/Jaspar(0.735)
More Information | Similar Motifs Found		motif file (matrix)
22 C A T G C G T A T C A G G C T A A G T C G C T A C T A G A G C T T A C G C G T A C T G A C T G A 1e-18-4.334e+010.17%0.01%3.0bp (2.7bp)PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer(0.706)
More Information | Similar Motifs Found		motif file (matrix)
23 C T G A C G T A C T A G A C T G A C G T A G T C C G T A C G A T A C T G A C G T A C G T A G T C 1e-18-4.334e+010.17%0.01%2.5bp (2.4bp)RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer(0.767)
More Information | Similar Motifs Found		motif file (matrix)
24 C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G 1e-17-3.980e+010.16%0.01%4.2bp (5.1bp)LBX1/MA0618.1/Jaspar(0.855)
More Information | Similar Motifs Found		motif file (matrix)
25 G T A C A C G T A T C G C G T A C A T G G T A C A C T G A T C G 1e-16-3.705e+010.59%0.15%4.3bp (4.0bp)Nkx2-5(var.2)/MA0503.1/Jaspar(0.660)
More Information | Similar Motifs Found		motif file (matrix)
26 A C T G A C G T T A C G C T A G G C T A A G T C A C G T G A C T 1e-15-3.531e+011.85%0.94%4.1bp (4.0bp)ZNF354C/MA0130.1/Jaspar(0.738)
More Information | Similar Motifs Found		motif file (matrix)
27 C G A T G C T A A C T G G T C A A G C T A G T C T C A G G T A C 1e-15-3.491e+010.40%0.08%4.3bp (3.9bp)Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer(0.693)
More Information | Similar Motifs Found		motif file (matrix)
28 A C T G C T A G A T C G A C G T A C T G A C T G G T A C A C T G 1e-13-3.094e+010.43%0.10%4.3bp (4.7bp)PB0164.1_Smad3_2/Jaspar(0.728)
More Information | Similar Motifs Found		motif file (matrix)
29 A G T C A C G T A C T G A G T C C G T A A C G T A C T G C G T A 1e-12-2.929e+010.20%0.02%3.3bp (3.5bp)MAFG::NFE2L1/MA0089.1/Jaspar(0.675)
More Information | Similar Motifs Found		motif file (matrix)
30 T G A C G T A C G A T C G T A C G A T C T G A C T A C G T C A G 1e-12-2.864e+015.42%3.90%4.0bp (4.7bp)PB0204.1_Zfp740_2/Jaspar(0.856)
More Information | Similar Motifs Found		motif file (matrix)
31 * A G T C A G T C A G T C C T A G A C G T C G T A T A C G A C T G 1e-11-2.664e+010.17%0.02%3.5bp (3.7bp)MZF1(var.2)/MA0057.1/Jaspar(0.658)
More Information | Similar Motifs Found		motif file (matrix)
32 * A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G 1e-11-2.560e+010.67%0.25%4.2bp (4.7bp)Barhl1/MA0877.1/Jaspar(0.815)
More Information | Similar Motifs Found		motif file (matrix)
33 * T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T 1e-10-2.317e+010.11%0.01%3.4bp (1.9bp)Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer(0.701)
More Information | Similar Motifs Found		motif file (matrix)
34 * A C T G A C T G A T C G A C T G A C G T A G T C C G T A A C G T 1e-8-1.924e+010.13%0.01%3.8bp (3.8bp)PB0057.1_Rxra_1/Jaspar(0.879)
More Information | Similar Motifs Found		motif file (matrix)