Information for 20-GCTTAATTAG (Motif 24)

C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A C T A G A G T C
p-value:1e-17
log p-value:-3.980e+01
Information Content per bp:1.944
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets10.6 +/- 4.2bp
Average Position of motif in Background11.2 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LBX1/MA0618.1/Jaspar

Match Rank:1
Score:0.85
Offset:2
Orientation:forward strand
Alignment:GCTTAATTAG
--TTAATTAG
 C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G
A C G T A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G

mix-a/MA0621.1/Jaspar

Match Rank:2
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GCTTAATTAG-
AATTAATTAGT
 C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G A C G T
C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:GCTTAATTAG-
-NNTAATTAGN
 C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G A C G T
A C G T T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T

PH0175.1_Vax2/Jaspar

Match Rank:4
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAATTAG-----
GNCTTAATTAGTGNNN
 A C G T C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G A G C T T G A C A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T T A C G A G T C G C T A T G A C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.82
Offset:3
Orientation:forward strand
Alignment:GCTTAATTAG-
---TAATTAGN
 C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G A C G T
A C G T A C G T A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C

NKX6-1/MA0674.1/Jaspar

Match Rank:6
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:GCTTAATTAG
--TTAATTAN
 C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G
A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:GCTTAATTAG
--NTAATTAG
 C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G
A C G T A C G T T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G

NOTO/MA0710.1/Jaspar

Match Rank:8
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GCTTAATTAG-
-NNTAATTAGN
 C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G A C G T
A C G T T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C

LMX1A/MA0702.1/Jaspar

Match Rank:9
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:GCTTAATTAG
--TTAATTAA
 C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G
A C G T A C G T A G C T G A C T G C T A C G T A C G A T G A C T C T G A T C G A

PH0160.1_Shox2/Jaspar

Match Rank:10
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---GCTTAATTAG----
NNNAATTAATTAANNNG
 A C G T A C G T A C G T C T A G A G T C A C G T A C G T C G T A C G T A C G A T C G A T C G T A A C T G A C G T A C G T A C G T A C G T
T A G C G T C A A G T C T C G A G T C A A G C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A T G C C A T G G T A C A T C G