Information for 19-GCTAATAG (Motif 32)

A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G
Reverse Opposite:
A G T C C G A T C G T A A C G T A C G T C G T A A T C G A G T C
p-value:1e-11
log p-value:-2.560e+01
Information Content per bp:1.923
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif100.9
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets9.4 +/- 4.2bp
Average Position of motif in Background10.4 +/- 4.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barhl1/MA0877.1/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GCTAATAG--
GCTAATTGCT
 A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G A C G T A C G T
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

EN2/MA0642.1/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GCTAATAG--
GNTAATTGGN
 A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G A C G T A C G T
T A C G A T G C A G C T T C G A C G T A A C G T A C G T T C A G T A C G A T C G

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GCTAATAG-
-NTAATTGN
 A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G A C G T
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCTAATAG-
-CTAATKGV
 A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G A C G T
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

VENTX/MA0724.1/Jaspar

Match Rank:5
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GCTAATAG--
-CTAATCGNT
 A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G A C G T A C G T
A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

GBX1/MA0889.1/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GCTAATAG--
GCTAATTAGN
 A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G A C G T A C G T
T C A G A T G C C G A T C T G A C T G A A C G T A G C T C T G A T A C G A G C T

GBX2/MA0890.1/Jaspar

Match Rank:7
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GCTAATAG--
NNTAATTGNN
 A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G A C G T A C G T
T A C G A G T C C G A T T G C A T G C A A C G T A G C T C T A G T A C G A G C T

ESX1/MA0644.1/Jaspar

Match Rank:8
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GCTAATAG--
GNTAATTGGN
 A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G A C G T A C G T
C A T G A G C T C G A T C T G A C T G A C A G T A G C T C T A G C T A G A G C T

BSX/MA0876.1/Jaspar

Match Rank:9
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GCTAATAG-
-NTAATTGG
 A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G A C G T
A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GCTAATAG-
-NTAATTGG
 A C T G A T G C A C G T C G T A C G T A A C G T G C T A A C T G A C G T
A C G T A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G