Information for 13-TGCTGCCACT (Motif 15)

A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A T C G C T A G A G T C C G T A C T A G A G T C G T C A
p-value:1e-28
log p-value:-6.574e+01
Information Content per bp:1.958
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets10.6 +/- 3.2bp
Average Position of motif in Background9.5 +/- 2.5bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TGCTGCCACT---
-NCTGTCAATCAN
 A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGCTGCCACT---
-SCTGTCAVTCAV
 A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGCTGCCACT
VGCTGWCAVB
 A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGCTGCCACT
TGCTGACTCA
 A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T
G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGCTGCCACT--
GSCTGTCACTCA
 A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T A C G T A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

NRL/MA0842.1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGCTGCCACT
AATTTGCTGAC---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGCTGCCACT---
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGCTGCCACT
-CTTGGCAA-
 A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGCTGCCACT
-GCTGTCAA-
 A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGCTGCCACT---
---MRSCACTYAA
 A C G T A C T G A G T C C G A T A C T G A G T C A T G C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A