Information for 9-YCYCCCAGCAGG (Motif 6)

A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G
Reverse Opposite:
A G T C A G T C C G A T A C T G A G T C A C G T A C T G C T A G A C T G C T G A C T A G C T G A
p-value:1e-47
log p-value:-1.089e+02
Information Content per bp:1.848
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.30%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets10.7 +/- 2.8bp
Average Position of motif in Background10.5 +/- 3.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:YCYCCCAGCAGG---
CCACACAGCAGGAGA
 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.87
Offset:3
Orientation:forward strand
Alignment:YCYCCCAGCAGG---
---CACAGCAGGGGG
 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:YCYCCCAGCAGG---
CCACACAGCAGGAGA
 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:YCYCCCAGCAGG-----
--DCHCAGCAGGRGGCC
 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:YCYCCCAGCAGG
--DCTCAGCAGG
 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.80
Offset:0
Orientation:forward strand
Alignment:YCYCCCAGCAGG---
GAGCACAGCAGGACA
 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:YCYCCCAGCAGG
--NAACAGCTGG
 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G
A C G T A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:YCYCCCAGCAGG--
----HCAGCTGDTN
 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:YCYCCCAGCAGG-
-----CAGCTGNT
 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:YCYCCCAGCAGG-----
---CACAGCGGGGGGTC
 A G C T A G T C G A C T A G T C G A T C A G T C C G T A A C T G A G T C G C T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C