Information for 23-NAGAGTGTTN (Motif 33)

T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T
Reverse Opposite:
C T G A C T G A C G T A T A G C G C T A T G A C G C A T A G T C G C A T A C G T
p-value:1e-10
log p-value:-2.317e+01
Information Content per bp:1.394
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets9.8 +/- 3.4bp
Average Position of motif in Background9.9 +/- 1.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:NAGAGTGTTN
TTRAGTGSYK
 T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Sox5/MA0087.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:NAGAGTGTTN
---ATTGTTA
 T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T
A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:NAGAGTGTTN
---ATTGTT-
 T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T
A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:NAGAGTGTTN
TTAAGTGCTT
 T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:NAGAGTGTTN
TTGAGTGSTT
 T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-NAGAGTGTTN
CTTGAGTGGCT
 A C G T T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-NAGAGTGTTN
CTYRAGTGSY-
 A C G T T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:NAGAGTGTTN--
---ATTGTTTAN
 T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T A C G T A C G T
A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

Foxd3/MA0041.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:NAGAGTGTTN----
--GAATGTTTGTTT
 T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---NAGAGTGTTN----
GGAAAAATTGTTAGGAA
 A C G T A C G T A C G T T G C A C G T A T C A G C G T A A C T G C G A T A T C G G C A T G A C T G A C T A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A