In [1]:
# Parameters
data_name = "Mbd2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:18:59,385 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Mbd2: Motif: M09258_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Mbd2: #1

Cell typeModiscoHomer
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0213209

Pattern: motif10.motif

Significance: 0.0107942

Unique Cell types only TF-MoDISco finds Mbd2: #61

Cell typeModiscoHomer
MPP;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.040313

Absent
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.0150144

Absent
memT;CD4+;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.0478967

/

Pattern: metacluster_1/pattern_24

Significance: 0.0482162

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0583585

/

Pattern: metacluster_1/pattern_25

Significance: 0.030447000000000002

Absent
matureB;A;CL

Pattern: metacluster_0/pattern_16

Significance: 0.042367

Absent
3134_mammaryADNCRCNM;D;En

Pattern: metacluster_0/pattern_26

Significance: 0.048060000000000005

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0280967

/

Pattern: metacluster_1/pattern_23

Significance: 0.0194297

/

Pattern: metacluster_1/pattern_26

Significance: 0.0243399

Absent
preB_BMD;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.0405555

Absent
A20;B-lymphoma;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.038353500000000006

Absent
MCRPHG_BMD.LPD_Stmltd;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.0485395

Absent
BSPHL;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.052866199999999995

/

Pattern: metacluster_1/pattern_20

Significance: 0.0399803

Absent
MN1;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0379875

Absent
ROD_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.055526599999999995

Absent
ROD_PHT_RCPTR_RTN;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.054746800000000005

Absent
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL

Pattern: metacluster_1/pattern_22

Significance: 0.0462354

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0530413

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0567884

/

Pattern: metacluster_0/pattern_9

Significance: 0.0172165

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.0105655

Absent
DC_BMD;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.0462712

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.0480174

/

Pattern: metacluster_1/pattern_24

Significance: 0.013762

Absent
NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0354403

Absent
DP;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.0585472

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.021844

Absent
ES;MEF;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.0535351

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_0

Significance: 0.049418699999999996

/

Pattern: metacluster_0/pattern_4

Significance: 0.059530999999999994

/

Pattern: metacluster_0/pattern_16

Significance: 0.0206175

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.0212774

/

Pattern: metacluster_1/pattern_18

Significance: 0.0143417

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_23

Significance: 0.056826999999999996

Absent
Heart;D;En

Pattern: metacluster_0/pattern_18

Significance: 0.050369800000000006

Absent
ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.030682400000000002

Absent
Mammary;A;CL

Pattern: metacluster_0/pattern_0

Significance: 0.0247642

Absent
npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.013068799999999998

Absent
ES;JM8.N4;Asynch;A;GEO

Pattern: metacluster_0/pattern_4

Significance: 0.0138013

/

Pattern: metacluster_0/pattern_5

Significance: 0.05585980000000001

Absent
ES;JM8.N4;Mitosis;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.00597112

/

Pattern: metacluster_0/pattern_20

Significance: 0.00935798

/

Pattern: metacluster_0/pattern_27

Significance: 0.00981791

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.059556899999999996

/

Pattern: metacluster_0/pattern_23

Significance: 0.0208012

/

Pattern: metacluster_0/pattern_26

Significance: 0.0432071

Absent
STMCH;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0430504

/

Pattern: metacluster_1/pattern_20

Significance: 0.022892

Absent
pErythroblast;A;En

Pattern: metacluster_1/pattern_2

Significance: 0.033604699999999994

Absent
eye-NRL_RTN;A;CL

Pattern: metacluster_0/pattern_3

Significance: 0.0492251

/

Pattern: metacluster_0/pattern_14

Significance: 0.0240568

/

Pattern: metacluster_0/pattern_17

Significance: 0.021712000000000002

Absent
NRV;Eye-OPTC;A;CL

Pattern: metacluster_0/pattern_20

Significance: 0.041538099999999994

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_0

Significance: 0.00792633

Absent
BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_22

Significance: 0.024568

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.0293629

Absent
BRN;MDL_OBLNGT;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.0344752

Absent
DC_LPS;4h;A;En

Pattern: metacluster_1/pattern_9

Significance: 0.0334983

Absent
BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_0

Significance: 0.047525599999999994

/

Pattern: metacluster_0/pattern_4

Significance: 0.0553552

Absent
ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0498121

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0119262

Absent
SHRT_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.047445999999999995

Absent
gamma_delta_TCR;A;CL

Pattern: metacluster_1/pattern_14

Significance: 0.0403971

Absent
ILC2;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.049574099999999996

Absent
aB_LPS+IL4+Oligomycin_24h;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.035533800000000004

/

Pattern: metacluster_1/pattern_15

Significance: 0.058215300000000005

/

Pattern: metacluster_1/pattern_26

Significance: 0.058904599999999994

Absent
wCH12;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0456883

Absent
CLP;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.0242795

Absent
wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_20

Significance: 0.033754400000000004

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_14

Significance: 0.0587519

Absent
Mammary_GLND;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.045189099999999996

/

Pattern: metacluster_1/pattern_3

Significance: 0.0498426

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.026054700000000004

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.017631599999999997

/

Pattern: metacluster_0/pattern_22

Significance: 0.0599841

/

Pattern: metacluster_0/pattern_24

Significance: 0.00989583

/

Pattern: metacluster_0/pattern_28

Significance: 0.025806700000000002

Absent
ILC2_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.0309454

Absent
TSLEC_SPLND;CD8+A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0372966

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.0589321

/

Pattern: metacluster_0/pattern_14

Significance: 0.039496699999999996

/

Pattern: metacluster_0/pattern_26

Significance: 0.0451798

Absent
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.0370082

Absent
Unique Cell types only Homer finds Mbd2: #4

Cell typeModiscoHomer
npES;5th_Rhmbmr_delA;E8.5;A;GEOAbsent

Pattern: motif14.motif

Significance: 0.0499296

aB;A;GEOAbsent

Pattern: motif15.motif

Significance: 0.00882993

placenta;A;CLAbsent

Pattern: motif16.motif

Significance: 0.00304622

ILC1_AbxGRMFree;A;GEOAbsent

Pattern: motif18.motif

Significance: 0.00194733