# Parameters
data_name = "Tead4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Tead4: #12
| Cell type | Modisco | Homer |
|---|---|---|
| ES;E14;A;GEO |
Significance: 0.0005739709999999999 |
Significance: 0.0209079 |
| LNG;P0;D;En |
Significance: 7.327149999999999e-05 |
Significance: 0.00144053 |
| LNG;8wks;D;En |
Significance: 9.13569e-05 |
Significance: 0.000292845 |
| Heart;P0;D;En |
Significance: 5.24151e-05 |
Significance: 0.00349232 |
| ES;MEF;A;CL |
Significance: 7.38774e-05 |
Significance: 0.013992 |
| wES;MSDRM;E11.5;D;En |
Significance: 0.000159543 |
Significance: 0.00639606 |
| Muller;P12;D;En |
Significance: 0.00419253 |
Significance: 0.0440111 |
| 3T3-L1;D;En |
Significance: 0.00116496 |
Significance: 0.00556131 |
| placenta;A;CL |
Significance: 0.00060115 |
Significance: 0.00598561 |
| NIH3T3_FBROBLST;D;En |
Significance: 0.000527472 |
Significance: 0.00024036400000000002 |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 9.8045e-05 |
Significance: 0.025787599999999997 |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.0470746 |
Significance: 0.000998732 |
Unique Cell types only TF-MoDISco finds Tead4: #54
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 2.93542e-05 | Absent |
| wES;limb;E11.5;D;En |
Significance: 5.4156899999999996e-05 | Absent |
| wES;Fr_lmb;E11.5;D;En |
Significance: 2.86608e-05 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 7.80038e-06 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.000561267 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 0.000101404 | Absent |
| STMCH;P0;D;En |
Significance: 0.0304932 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.000257734 | Absent |
| NIH3T3;D;En |
Significance: 0.0233983 | Absent |
| ES;E14;A;CL |
Significance: 0.00220055 | Absent |
| LNG;A;CL |
Significance: 0.00530718 | Absent |
| Mammary;A;CL |
Significance: 0.0313254 | Absent |
| ES;F1216;A;GEO |
Significance: 0.000392339 | Absent |
| ES;v6.5;A;GEO |
Significance: 0.00135408 | Absent |
| Mammary_GLND;A;GEO |
Significance: 2.33173e-05 | Absent |
| ENDRM_ESD;A;GEO |
Significance: 0.011681 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0118734 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 9.003760000000001e-05 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.00128699 | Absent |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 4.82583e-05 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.00019163 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 4.31908e-05 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 1.60115e-05 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.0468299 | Absent |
| wES;posterior;1;E8.5;A;GEO |
Significance: 4.83049e-05 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.000157325 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.000105979 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 0.000162297 | Absent |
| BCK_SKN;A;GEO |
Significance: 2.45467e-05 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.000100281 | Absent |
| NPC;F129;A;GEO |
Significance: 0.00140692 | Absent |
| NPC;G4;A;GEO |
Significance: 0.000543075 | Absent |
| NPC;Ch13;A;GEO |
Significance: 9.97303e-05 | Absent |
| NPC;mE6;A;GEO |
Significance: 8.26e-05 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.000225356 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 5.7051499999999994e-05 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.000250016 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 2.83517e-05 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.00620645 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.000244919 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.000354779 | Absent |
| ES;ZhBTc4;2;D;GEO |
Significance: 4.50628e-05 | Absent |
| ES;D0;D;GEO |
Significance: 0.000541885 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.04523219999999999 | Absent |
| LNG;8wks;D;GEO |
Significance: 0.00983302 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.0005463940000000001 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.028930599999999997 | Absent |
| ES;E14;D;En |
Significance: 0.00774827 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.0005604609999999999 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.000184033 | Absent |
| KDNY;P0;D;En |
Significance: 2.17646e-05 | Absent |
| KDNY;8wks;D;En |
Significance: 0.032758499999999996 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.000113097 | Absent |
| wES;RTN;E11.5;D;En |
Significance: 0.00154059 | Absent |
