In [1]:
# Parameters
data_name = "Tead1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:43:41,950 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Tead1: Motif: M09438_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tead1: #8

Cell typeModiscoHomer
ES;E14;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00508047

Pattern: motif15.motif

Significance: 0.000962657

LNG;P0;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.00024102

Pattern: motif14.motif

Significance: 0.00153656

LNG;8wks;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.000565848

Pattern: motif15.motif

Significance: 0.00026622799999999997

Heart;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.000176259

Pattern: motif10.motif

Significance: 0.00179584

ES;MEF;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.000325046

Pattern: motif3.motif

Significance: 0.038750099999999996

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.00113569

Pattern: motif7.motif

Significance: 0.00552019

3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.021547

Pattern: motif8.motif

Significance: 0.000998732

placenta;A;CL

Pattern: metacluster_0/pattern_2

Significance: 0.00568186

Pattern: motif3.motif

Significance: 0.0221289

Unique Cell types only TF-MoDISco finds Tead1: #56

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.000367296

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_14

Significance: 0.0011085000000000001

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.0020422

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_10

Significance: 1.6658e-05

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_15

Significance: 0.00486568

Absent
wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.000162695

Absent
STMCH;P0;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0529518

Absent
3134_mammaryADNCRCNM;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00143995

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0198988

Absent
ES;E14;A;CL

Pattern: metacluster_1/pattern_8

Significance: 0.00766978

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.00291358

Absent
Mammary;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.0369476

Absent
ES;F1216;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00241992

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.00871739

Absent
Mammary_GLND;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.00024985

Absent
ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.0214915

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00456775

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00137465

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00128646

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.0010157999999999999

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00197887

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00220816

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.000846003

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00016713

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0468299

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.000989763

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.000994144

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0052652

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.000852801

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00048982

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 2.9963800000000003e-05

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.00061629

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.011954799999999998

Absent
NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00104271

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.000506361

Absent
ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00170241

Absent
npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.00235913

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.00179235

Absent
ES;JM8.N4;Asynch;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.000221731

Absent
ES;JM8.N4;Mitosis;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.015333500000000002

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.00477132

Absent
ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00370103

Absent
ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.00130498

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.00726116

Absent
NIH3T3_FBROBLST;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.013194599999999999

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00424756

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_6

Significance: 0.00463943

Absent
ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.028930599999999997

/

Pattern: metacluster_1/pattern_22

Significance: 0.0158096

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.016305700000000003

/

Pattern: metacluster_1/pattern_23

Significance: 0.0153421

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.00484511

Absent
FBRBLST;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.051012800000000004

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.000273383

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.032758499999999996

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.000113097

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_27

Significance: 0.010004700000000002

Absent
Muller;P12;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.00911877

Absent
Unique Cell types only Homer finds Tead1: #2

Cell typeModiscoHomer
NIH3T3_FBROBLST;D;EnAbsent

Pattern: motif8.motif

Significance: 9.99216e-05

3T3-L1;D;EnAbsent

Pattern: motif4.motif

Significance: 0.00549692