# Parameters
data_name = "Nr1h4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Nr1h4: #1
| Cell type | Modisco | Homer |
|---|---|---|
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.0542071 |
Significance: 0.051387999999999996 |
Unique Cell types only TF-MoDISco finds Nr1h4: #74
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.0305058 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.012078 | Absent |
| GC_B;A;CL |
Significance: 0.0324365 | Absent |
| plasmaB;A;CL |
Significance: 0.0310375 | Absent |
| A20;B-lymphoma;D;En |
Significance: 0.056353 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.05665359999999999 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 0.027373200000000004 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.0332534 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.0496704 | Absent |
| MN1;D;En |
Significance: 0.026407599999999996 | Absent |
| 3T3-L1;D;En |
Significance: 0.054220800000000006 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.055819900000000006 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0390467 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.011100299999999999 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.0585018 | Absent |
| Erythroblast;A;CL |
Significance: 0.0394005 | Absent |
| DP;A;CL |
Significance: 0.052887199999999995 | Absent |
| DP3b;A;CL |
Significance: 0.0264022 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.038939999999999995 | Absent |
| Mammary;A;CL |
Significance: 0.03691830000000001 | Absent |
| testis;A;CL |
Significance: 0.0119973 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.0128921 | Absent |
| STMCH;A;CL |
Significance: 0.0436843 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.0224422 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.047735900000000005 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.047525599999999994 | Absent |
| aB;CD180;A;CL |
Significance: 0.0264125 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.012335299999999999 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.0367999 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0191148 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.044471199999999995 | Absent |
| wCH12;A;CL |
Significance: 0.0281466 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.0509076 | Absent |
| NTRPHL;A;GEO |
Significance: 0.0375653 | Absent |
| ES;E14;A;GEO |
Significance: 0.0507641 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.039822699999999996 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.0505009 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.0199353 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.0278528 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.054044100000000005 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.054670800000000006 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.019873599999999998 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.049251199999999995 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0327507 | Absent |
| preB_BMD;A;GEO |
Significance: 0.0124838 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.047276 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 0.0311899 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.0409032 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.0492417 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0349332 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.0250907 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.023012900000000003 | Absent |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 0.0325436 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.039037699999999995 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.0462478 | Absent |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.038410400000000004 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.04924269999999999 | Absent |
| NPC;F129;A;GEO |
Significance: 0.034214999999999995 | Absent |
| NPC;mE6;A;GEO |
Significance: 0.00821423 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.0161208 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.0304894 | Absent |
| MegEP;A;CL |
Significance: 0.031051299999999997 | Absent |
| pErythroblast;A;En |
Significance: 0.0508992 | Absent |
| pCMP;A;CL |
Significance: 0.0132905 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.042408999999999995 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.018018799999999998 | Absent |
| LNG;8wks;D;GEO |
Significance: 0.011233400000000001 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.0379188 | Absent |
| Heart;P0;D;En |
Significance: 0.00947328 | Absent |
| wES;RTN;E11.5;D;En |
Significance: 0.0299231 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.035068199999999994 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.055573300000000006 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.0269567 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.0576791 | Absent |
