In [1]:
# Parameters
data_name = "Ddit3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:01:06,010 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Ddit3: Motif: M08822_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Ddit3: #24

Cell typeModiscoHomer
416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00230506

Pattern: motif6.motif

Significance: 4.7921400000000005e-05

AML;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.00738977

Pattern: motif3.motif

Significance: 0.0178857

DC_LPS;6h;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.000889826

/

Pattern: metacluster_1/pattern_7

Significance: 0.046419699999999994

Pattern: motif5.motif

Significance: 0.0319491

BSPHL;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.00249072

Pattern: motif6.motif

Significance: 0.0370513

ESNPHL_ex-vivo_BlbC;A;CL

Pattern: metacluster_0/pattern_2

Significance: 0.0036695

Pattern: motif9.motif

Significance: 0.031095099999999997

DC_LPS;2h;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0057588

/

Pattern: metacluster_1/pattern_6

Significance: 0.03529469999999999

Pattern: motif6.motif

Significance: 0.0368779

NTRPHL;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00232538

Pattern: motif3.motif

Significance: 0.0223058

DC_pBMD;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.000955013

/

Pattern: metacluster_1/pattern_6

Significance: 0.042954

Pattern: motif2.motif

Significance: 0.000451679

3T3-L1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.00019323400000000003

Pattern: motif9.motif

Significance: 0.00298238

pMeg;A;En

Pattern: metacluster_1/pattern_2

Significance: 0.00378643

Pattern: motif3.motif

Significance: 0.0108435

MegP;A;En

Pattern: metacluster_1/pattern_3

Significance: 0.00157218

Pattern: motif4.motif

Significance: 0.00769462

DC_LPS;4h;A;En

Pattern: metacluster_1/pattern_5

Significance: 0.00163018

/

Pattern: metacluster_1/pattern_8

Significance: 0.058959300000000006

Pattern: motif6.motif

Significance: 0.0344668

pGMP;A;En

Pattern: metacluster_1/pattern_2

Significance: 0.00277158

Pattern: motif3.motif

Significance: 0.0167048

DC;A;En

Pattern: metacluster_1/pattern_5

Significance: 0.0013997999999999999

/

Pattern: metacluster_1/pattern_7

Significance: 0.0594048

Pattern: motif5.motif

Significance: 0.024001599999999998

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.00428788

Pattern: motif3.motif

Significance: 0.026879900000000005

416B_MP;CD34+;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.00346472

Pattern: motif6.motif

Significance: 0.059041199999999995

FBRBLST;8wks;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00196359

Pattern: motif14.motif

Significance: 0.052006399999999994

3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.000330534

Pattern: motif17.motif

Significance: 3.91664e-06

LVR;8wks;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00281732

Pattern: motif3.motif

Significance: 0.0255205

NTRPHL;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.00197412

/

Pattern: metacluster_0/pattern_12

Significance: 0.0392211

Pattern: motif5.motif

Significance: 0.0457715

LNG;8wks;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00298286

/

Pattern: metacluster_0/pattern_6

Significance: 0.044499199999999996

Pattern: motif2.motif

Significance: 0.0371596

Adipose;D;En

Pattern: metacluster_0/pattern_0

Significance: 0.010428299999999998

/

Pattern: metacluster_0/pattern_1

Significance: 0.00483613

Pattern: motif1.motif

Significance: 0.0163807

416B_MP;CD34+;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00506629

Pattern: motif6.motif

Significance: 0.018550999999999998

Muller;P12;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.00214237

/

Pattern: metacluster_1/pattern_11

Significance: 0.056205099999999994

Pattern: motif9.motif

Significance: 0.0503248

Unique Cell types only TF-MoDISco finds Ddit3: #60

Cell typeModiscoHomer
MPP;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.00621977

Absent
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.0508957

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_9

Significance: 0.0297457

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0478989

Absent
STMCH;P0;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.016785599999999998

Absent
SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00439979

Absent
3134_mammaryADNCRCNM;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.00045165699999999995

Absent
MCRPHG_BMD.UnStmltd;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0526202

/

Pattern: metacluster_1/pattern_7

Significance: 0.013748699999999999

Absent
MCRPHG_BMD.LPD_Stmltd;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00385959

/

Pattern: metacluster_1/pattern_7

Significance: 0.0560835

Absent
CH12.LX;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.034912

Absent
MEL;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.00371987

Absent
MEL_Znc_di-cl;24h;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.0149784

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00196048

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0478734

/

Pattern: metacluster_0/pattern_16

Significance: 0.027273200000000004

/

Pattern: metacluster_0/pattern_17

Significance: 0.00025448

Absent
ESNPHL_SPLND_BlbCA;CL

Pattern: metacluster_0/pattern_8

Significance: 0.00242952

Absent
MN1;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.000613857

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.015631700000000002

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0309099

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0539247

Absent
DC_BMD;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.0499634

/

Pattern: metacluster_1/pattern_9

Significance: 0.024653599999999998

Absent
MCRPHG;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.014235499999999998

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0414381

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0450523

Absent
ES;MEF;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.000305855

Absent
ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.054184300000000005

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0317248

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_8

Significance: 0.00471556

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.0434875

Absent
Heart;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.0238387

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0297341

Absent
Mammary;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.00784413

Absent
Adrenal;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0040591

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.00153182

/

Pattern: metacluster_0/pattern_8

Significance: 0.0486605

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_8

Significance: 0.00506722

Absent
pCMP;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.0206179

Absent
BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_19

Significance: 0.0349779

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.059602999999999996

Absent
NIH3T3_FBROBLST;D;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00721746

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.05749830000000001

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.0039876

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_14

Significance: 0.0086785

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.0596418

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00290087

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.00014289200000000001

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.00840606

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.053796699999999996

Absent
wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_9

Significance: 0.0059767

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0069755

Absent
LNG;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00277221

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.025153599999999998

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_10

Significance: 0.0248338

Absent
Mammary_GLND;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00160967

Absent
Heart;P0;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.031091900000000006

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.05846669999999999

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.00273062

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.0433523

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.0449198

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.039801199999999995

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_15

Significance: 0.0587004

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.048710500000000004

/

Pattern: metacluster_1/pattern_10

Significance: 0.051495000000000006

Absent
Unique Cell types only Homer finds Ddit3: #2

Cell typeModiscoHomer
restingB;A;CLAbsent

Pattern: motif15.motif

Significance: 0.0587057

aB_LPS+IL21;A;CLAbsent

Pattern: motif15.motif

Significance: 0.0530492