In [1]:
# Parameters
data_name = "Bhlha15"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:59:10,962 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Bhlha15: Motif: M08774_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Bhlha15: #39

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0169932

Pattern: motif5.motif

Significance: 0.013133500000000001

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00770948

/

Pattern: metacluster_0/pattern_7

Significance: 0.042116100000000004

Pattern: motif12.motif

Significance: 0.052213999999999997

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.018165200000000003

Pattern: motif6.motif

Significance: 0.0263493

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.048054599999999996

Pattern: motif11.motif

Significance: 0.048942900000000004

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0410005

Pattern: motif5.motif

Significance: 0.0316694

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.0165506

Pattern: motif7.motif

Significance: 0.0532775

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.015087999999999999

Pattern: motif15.motif

Significance: 0.0241832

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.010476000000000001

Pattern: motif10.motif

Significance: 0.028565499999999997

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.00133412

Pattern: motif9.motif

Significance: 0.022834200000000002

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00020360900000000002

Pattern: motif9.motif

Significance: 0.000335661

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.000599735

/

Pattern: metacluster_1/pattern_18

Significance: 0.0480864

Pattern: motif11.motif

Significance: 0.014593700000000001

3T3-L1;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0349612

Pattern: motif15.motif

Significance: 0.056063699999999994

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.017681

Pattern: motif13.motif

Significance: 0.0405639

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00582295

Pattern: motif10.motif

Significance: 0.0159364

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.000617165

Pattern: motif9.motif

Significance: 0.00815796

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00855318

Pattern: motif13.motif

Significance: 0.00689822

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00142326

Pattern: motif11.motif

Significance: 0.0115942

ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.023866099999999998

Pattern: motif4.motif

Significance: 0.00247762

eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.0286909

Pattern: motif4.motif

Significance: 0.00077762

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.00697041

Pattern: motif15.motif

Significance: 0.0253346

Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0186097

Pattern: motif13.motif

Significance: 0.056486800000000004

BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.0152666

Pattern: motif15.motif

Significance: 0.00047420599999999997

BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.012074

Pattern: motif7.motif

Significance: 0.0055931999999999996

BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.018481599999999997

Pattern: motif7.motif

Significance: 0.0182432

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0294981

/

Pattern: metacluster_1/pattern_10

Significance: 0.00175071

Pattern: motif2.motif

Significance: 0.0230692

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.00703216

Pattern: motif13.motif

Significance: 0.00110117

KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.054024800000000005

Pattern: motif15.motif

Significance: 0.0575499

LNG;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0412994

Pattern: motif18.motif

Significance: 0.0155107

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00532126

Pattern: motif2.motif

Significance: 0.00263517

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.026290499999999998

Pattern: motif16.motif

Significance: 0.011891200000000001

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.014379399999999999

Pattern: motif14.motif

Significance: 0.058075699999999994

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0110114

Pattern: motif4.motif

Significance: 0.00308512

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00811636

Pattern: motif11.motif

Significance: 0.03175

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0311348

/

Pattern: metacluster_1/pattern_15

Significance: 0.058633500000000005

Pattern: motif7.motif

Significance: 0.00267641

Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011445100000000001

Pattern: motif8.motif

Significance: 0.028760400000000005

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0347133

Pattern: motif19.motif

Significance: 0.0324823

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00394079

/

Pattern: metacluster_1/pattern_6

Significance: 0.015412100000000001

Pattern: motif10.motif

Significance: 0.0179583

WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0304343

/

Pattern: metacluster_1/pattern_11

Significance: 0.0118303

Pattern: motif2.motif

Significance: 0.0339913

wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0263507

Pattern: motif4.motif

Significance: 0.0194387

Unique Cell types only TF-MoDISco finds Bhlha15: #43

Cell typeModiscoHomer
proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.000668353

Absent
preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.000672082

Absent
B1_B;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.04648819999999999

Absent
prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.00784307

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.0159248

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0307514

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.0238531

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0518774

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.019953099999999998

/

Pattern: metacluster_0/pattern_22

Significance: 0.040749

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.045538300000000004

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.025775799999999998

/

Pattern: metacluster_0/pattern_22

Significance: 0.0197017

/

Pattern: metacluster_0/pattern_24

Significance: 0.0149825

Absent
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0212349

Absent
smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.030724

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.025777800000000003

/

Pattern: metacluster_0/pattern_22

Significance: 0.022395500000000002

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.00998294

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00600887

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.014566899999999999

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.014057399999999998

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.0142395

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00982

Absent
DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0465283

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.013796899999999999

Absent
DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0337202

Absent
ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00202878

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0337914

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.00304366

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.000574768

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.010155299999999999

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00506844

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.000509239

Absent
NIH3T3_FBROBLST;D;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0332898

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.018043599999999996

Absent
FBRBLST;8wks;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.05449059999999999

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.00544895

Absent
3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0424763

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.00602435

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0583815

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.048498599999999996

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.017283700000000003

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00956437

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.00428863

/

Pattern: metacluster_0/pattern_12

Significance: 0.0398579

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00474469

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.016348400000000003

Absent
Unique Cell types only Homer finds Bhlha15: #2

Cell typeModiscoHomer
wES;LNG;E14.5;D;EnAbsent

Pattern: motif13.motif

Significance: 0.0118503

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.00959585