Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/U_2_S29_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4183
Total background sequences = 20688
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-208	-4.794e+02	27.92%	10.69%	320.7bp (215.3bp)	REB1(MacIsaac)/Yeast(0.991) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-105	-2.431e+02	33.13%	18.87%	309.2bp (242.7bp)	RSC3/MA0374.1/Jaspar(0.870) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-100	-2.307e+02	40.81%	25.69%	348.9bp (206.7bp)	hb/dmmpmm(SeSiMCMC)/fly(0.909) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-46	-1.078e+02	7.98%	3.29%	296.0bp (223.2bp)	TYE7(MacIsaac)/Yeast(0.997) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-43	-9.966e+01	38.32%	28.36%	372.5bp (206.1bp)	TATA-box/SacCer-Promoters/Homer(0.856) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-41	-9.639e+01	22.11%	14.26%	370.7bp (227.3bp)	IME1/MA0320.1/Jaspar(0.881) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-38	-8.944e+01	19.05%	11.98%	355.0bp (213.0bp)	SPL14(SBP)/Arabidopsis thaliana/AthaMap(0.739) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-38	-8.845e+01	10.47%	5.36%	326.6bp (199.4bp)	RAP1/MA0359.1/Jaspar(0.857) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-36	-8.513e+01	9.30%	4.61%	337.0bp (228.1bp)	RDS1(MacIsaac)/Yeast(0.858) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-36	-8.407e+01	16.61%	10.20%	393.8bp (210.9bp)	TOD6?/SacCer-Promoters/Homer(0.816) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-33	-7.705e+01	25.56%	17.99%	352.8bp (229.9bp)	Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.923) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-29	-6.781e+01	9.44%	5.13%	303.0bp (201.9bp)	OPI1/Literature(Harbison)/Yeast(0.806) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-29	-6.766e+01	18.17%	12.08%	351.0bp (200.4bp)	Trl/dmmpmm(Pollard)/fly(0.788) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-27	-6.361e+01	22.57%	16.03%	361.8bp (199.5bp)	DAL82/MA0291.1/Jaspar(0.766) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-27	-6.310e+01	7.82%	4.07%	345.7bp (206.2bp)	RPH1/Literature(Harbison)/Yeast(0.721) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-26	-6.170e+01	9.37%	5.25%	365.0bp (208.3bp)	INO2/INO2_YPD/1-INO4,2-INO2(Harbison)/Yeast(0.839) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-21	-4.907e+01	10.95%	6.90%	323.3bp (193.8bp)	Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer(0.692) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-20	-4.784e+01	25.46%	19.46%	353.7bp (203.1bp)	PHD1(MacIsaac)/Yeast(0.765) More Information \| Similar Motifs Found	motif file (matrix)
19		1e-14	-3.313e+01	14.89%	10.96%	338.1bp (199.5bp)	STP3/MA0396.1/Jaspar(0.726) More Information \| Similar Motifs Found	motif file (matrix)