Information for 16-CTCTCACT (Motif 13)


Reverse Opposite:

p-value:1e-29
log p-value:-6.766e+01
Information Content per bp:1.899
Number of Target Sequences with motif760.0
Percentage of Target Sequences with motif18.17%
Number of Background Sequences with motif2500.4
Percentage of Background Sequences with motif12.08%
Average Position of motif in Targets433.2 +/- 351.0bp
Average Position of motif in Background284.6 +/- 200.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CTCTCACT
TTGCTCTCTC-

Trl/MA0205.1/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CTCTCACT
TTGCTCTCTC-

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CTCTCACT--
CTCTCTCTCY

Su(H)/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CTCTCACT
CTCCCAC-

z/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTCTCACT
CACTCA--

Trl/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----CTCTCACT
TTNCTCTCTCTCT

z/dmmpmm(Down)/fly

Match Rank:7
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTCTCACT
CACTCA--

SeqBias: GA-repeat

Match Rank:8
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCACT-
TCTCTCTCTC

Trl/dmmpmm(Down)/fly

Match Rank:9
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CTCTCACT-
GCTCTCTCTCTC

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:10
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTCTCACT
CTCTCTCY