Information for 5-RTCACGTG (Motif 4)


Reverse Opposite:

p-value:1e-46
log p-value:-1.078e+02
Information Content per bp:1.908
Number of Target Sequences with motif334.0
Percentage of Target Sequences with motif7.98%
Number of Background Sequences with motif681.5
Percentage of Background Sequences with motif3.29%
Average Position of motif in Targets402.2 +/- 296.0bp
Average Position of motif in Background288.9 +/- 223.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TYE7(MacIsaac)/Yeast

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:RTCACGTG
GTCACGTG

Arntl/MA0603.1/Jaspar

Match Rank:2
Score:0.99
Offset:-1
Orientation:forward strand
Alignment:-RTCACGTG-
GGTCACGTGC

TYE7/MA0409.1/Jaspar

Match Rank:3
Score:0.98
Offset:1
Orientation:reverse strand
Alignment:RTCACGTG
-TCACGTG

CBF1/CBF1_SM/72-CBF1(Harbison)/Yeast

Match Rank:4
Score:0.98
Offset:1
Orientation:forward strand
Alignment:RTCACGTG
-TCACGTG

CBF1(MacIsaac)/Yeast

Match Rank:5
Score:0.98
Offset:0
Orientation:forward strand
Alignment:RTCACGTG
GTCACGTG

Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer

Match Rank:6
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-RTCACGTG-
DRTCACGTGA

CBF1/MA0281.1/Jaspar

Match Rank:7
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:RTCACGTG-
-TCACGTGC

TFE3/MA0831.1/Jaspar

Match Rank:8
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:RTCACGTG--
GTCACGTGNT

SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer

Match Rank:9
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:RTCACGTG---
-TCACGTGVNW

MLXIPL/MA0664.1/Jaspar

Match Rank:10
Score:0.96
Offset:0
Orientation:forward strand
Alignment:RTCACGTG--
ATCACGTGAT