Information for 6-CGTATATA (Motif 5)


Reverse Opposite:

p-value:1e-43
log p-value:-9.966e+01
Information Content per bp:1.695
Number of Target Sequences with motif1603.0
Percentage of Target Sequences with motif38.32%
Number of Background Sequences with motif5868.7
Percentage of Background Sequences with motif28.36%
Average Position of motif in Targets409.7 +/- 372.5bp
Average Position of motif in Background284.9 +/- 206.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.47
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-box/SacCer-Promoters/Homer

Match Rank:1
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:CGTATATA----
--TATATAWDVV

Cf2/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CGTATATA--
-GTATATATA

MOT2/MA0379.1/Jaspar

Match Rank:3
Score:0.81
Offset:3
Orientation:forward strand
Alignment:CGTATATA
---ATATA

Cf2/MA0015.1/Jaspar

Match Rank:4
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CGTATATA---
-GTATATATAC

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---CGTATATA------
ANNNGGATATATCCNNN

YAP6(MacIsaac)/Yeast

Match Rank:6
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CGTATATA-
-TTACATAA

bin/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CGTATATA
-ATAAATA

NHP6A/MA0345.1/Jaspar

Match Rank:8
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----CGTATATA--------
NNATNNTTATATATAGNNNAN

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CGTATATA--------
-GTATAAAAGGCGGGG

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CGTATATA--------
-GTATAAAAGGCGGGG