Information for 8-CCGTGCAG (Motif 7)


Reverse Opposite:

p-value:1e-38
log p-value:-8.944e+01
Information Content per bp:1.665
Number of Target Sequences with motif797.0
Percentage of Target Sequences with motif19.05%
Number of Background Sequences with motif2479.9
Percentage of Background Sequences with motif11.98%
Average Position of motif in Targets447.5 +/- 355.0bp
Average Position of motif in Background283.1 +/- 213.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------CCGTGCAG-----
TCGCGTCCGTACAGGAGGG

SPL14/MA0586.1/Jaspar

Match Rank:2
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------CCGTGCAG-----
TCGCGTCCGTACAGGAGGG

SPL12/MA1057.1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CCGTGCAG
NCCGTACN-

SPL5/MA1059.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CCGTGCAG
NCCGTACNN

SPL1/MA1055.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCGTGCAG
CCGTACGG

POPTR_0002s00440g/MA0955.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCGTGCAG
CCGTACN-

FHL1(MacIsaac)/Yeast

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCGTGCAG
ATCCGTACAT

SPL11/MA1056.1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCGTGCAG--
NTCCGTACGNNN

FHL1/FHL1_YPD/47-RAP1(Harbison)/Yeast

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCGTGCAG
CACCCGTACAT

prd/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCGTGCAG----
AGCGTGACGGATT