Information for 25-TMGCGCGA (Motif 19)


Reverse Opposite:

p-value:1e-14
log p-value:-3.313e+01
Information Content per bp:1.734
Number of Target Sequences with motif623.0
Percentage of Target Sequences with motif14.89%
Number of Background Sequences with motif2267.4
Percentage of Background Sequences with motif10.96%
Average Position of motif in Targets407.2 +/- 338.1bp
Average Position of motif in Background290.2 +/- 199.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STP3/MA0396.1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TMGCGCGA
GCTAGCGCA-

STP4/MA0397.1/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TMGCGCGA
GATAGCGCA-

GFX(?)/Promoter/Homer

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----TMGCGCGA
ATTCTCGCGAGA

ZBTB33/MA0527.1/Jaspar

Match Rank:4
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------TMGCGCGA-
NAGNTCTCGCGAGAN

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TMGCGCGA---
TTCGCGCGAAAA

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----TMGCGCGA--
GGNTCTCGCGAGAAC

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TMGCGCGA----
TGGCGGGAAAHB

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TMGCGCGA---
-GGCGGGAARN

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TMGCGCGA---
-GGCGGGAAAH

efl-1/MA0541.1/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TMGCGCGA----
CGCGCGCGCGAAATT