Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/Kt_1_S13_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4334
Total background sequences = 21282
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-212	-4.894e+02	27.32%	10.39%	311.8bp (209.6bp)	REB1(MacIsaac)/Yeast(0.991) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-104	-2.415e+02	43.17%	27.69%	322.3bp (237.9bp)	RSC30/MA0375.1/Jaspar(0.863) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-101	-2.327e+02	39.06%	24.35%	333.4bp (196.8bp)	hb/dmmpmm(SeSiMCMC)/fly(0.909) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-62	-1.440e+02	8.44%	3.12%	287.4bp (210.9bp)	TYE7(MacIsaac)/Yeast(0.996) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-48	-1.122e+02	28.54%	19.25%	352.6bp (216.7bp)	IME1/MA0320.1/Jaspar(0.789) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-41	-9.650e+01	43.05%	33.10%	328.7bp (192.7bp)	TATA-box/SacCer-Promoters/Homer(0.883) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-40	-9.320e+01	11.65%	6.19%	353.9bp (204.2bp)	TOD6?/SacCer-Promoters/Homer(0.948) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-35	-8.241e+01	9.55%	4.92%	286.1bp (199.0bp)	OPI1/Literature(Harbison)/Yeast(0.902) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-33	-7.708e+01	6.62%	2.99%	317.0bp (235.9bp)	Ahr::Arnt/MA0006.1/Jaspar(0.820) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-29	-6.835e+01	9.30%	5.07%	393.9bp (201.7bp)	RPH1/Literature(Harbison)/Yeast(0.715) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-28	-6.496e+01	15.74%	10.26%	352.9bp (212.4bp)	HAL9/MA0311.1/Jaspar(0.824) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-24	-5.560e+01	10.08%	6.04%	316.7bp (198.3bp)	Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer(0.888) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-21	-4.868e+01	4.59%	2.17%	244.2bp (208.1bp)	SFP1(MacIsaac)/Yeast(0.876) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-17	-4.052e+01	4.94%	2.59%	328.1bp (193.1bp)	RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast(0.941) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-17	-3.973e+01	1.85%	0.59%	259.8bp (200.5bp)	Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer(0.746) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-17	-3.928e+01	11.84%	8.09%	360.5bp (233.3bp)	ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer(0.758) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-16	-3.781e+01	4.36%	2.24%	307.7bp (220.5bp)	MSN4(MacIsaac)/Yeast(0.869) More Information \| Similar Motifs Found	motif file (matrix)
18 *		1e-11	-2.734e+01	34.24%	29.32%	335.1bp (186.8bp)	YAP7/YAP7_H2O2Hi/[](Harbison)/Yeast(0.738) More Information \| Similar Motifs Found	motif file (matrix)
19 *		1e-9	-2.295e+01	51.59%	46.76%	345.9bp (184.6bp)	tll/dmmpmm(Down)/fly(0.790) More Information \| Similar Motifs Found	motif file (matrix)