Information for 10-CGCCTTAA (Motif 10)


Reverse Opposite:

p-value:1e-29
log p-value:-6.835e+01
Information Content per bp:1.894
Number of Target Sequences with motif403.0
Percentage of Target Sequences with motif9.30%
Number of Background Sequences with motif1080.1
Percentage of Background Sequences with motif5.07%
Average Position of motif in Targets466.2 +/- 393.9bp
Average Position of motif in Background279.6 +/- 201.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPH1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGCCTTAA--
CCCCTTAAGG

RPH1(MacIsaac)/Yeast

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGCCTTAA--
CCCCTTAAGG

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------CGCCTTAA
NNGGCCACGCCTTTN

PROX1/MA0794.1/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CGCCTTAA
CAAGACGCCTTA-

MBP1::SWI6/MA0330.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CGCCTTAA
ACGCGTT--

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CGCCTTAA-
NTCGCGCGCCTTNNN

MSN4(MacIsaac)/Yeast

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGCCTTAA
CCCCCTT--

YY2/MA0748.1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGCCTTAA
GTCCGCCATTA

RPH1/MA0372.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGCCTTAA
ACCCCTAA-

PB0009.1_E2F3_1/Jaspar

Match Rank:10
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CGCCTTAA-
ANCGCGCGCCCTTNN