Information for 20-CCCCTTTC (Motif 17)


Reverse Opposite:

p-value:1e-16
log p-value:-3.781e+01
Information Content per bp:1.959
Number of Target Sequences with motif189.0
Percentage of Target Sequences with motif4.36%
Number of Background Sequences with motif477.4
Percentage of Background Sequences with motif2.24%
Average Position of motif in Targets451.4 +/- 307.7bp
Average Position of motif in Background289.3 +/- 220.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MSN4(MacIsaac)/Yeast

Match Rank:1
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTTTC
CCCCCTT--

YER130C/MA0423.1/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CCCCTTTC
ACCCCTATT

MSN4/Literature(Harbison)/Yeast

Match Rank:3
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTTTC
NCCCCTG--

MSN2(MacIsaac)/Yeast

Match Rank:4
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTTTC
GCCCCTT--

MSN4/MA0342.1/Jaspar

Match Rank:5
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CCCCTTTC
CCCCT---

RGM1/MA0366.1/Jaspar

Match Rank:6
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CCCCTTTC
CCCCT---

GIS1/MA0306.1/Jaspar

Match Rank:7
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CCCCTTTC
ACCCCTAAA

MSN2/MA0341.1/Jaspar

Match Rank:8
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CCCCTTTC
CCCCT---

MSN2/MSN2_H2O2Hi/1-MSN2(Harbison)/Yeast

Match Rank:9
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CCCCTTTC
CCGCCCCTT--

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CCCCTTTC---
NNGCACCTTTCTCC