Information for 5-CTMSGCGG (Motif 5)


Reverse Opposite:

p-value:1e-48
log p-value:-1.122e+02
Information Content per bp:1.442
Number of Target Sequences with motif1237.0
Percentage of Target Sequences with motif28.54%
Number of Background Sequences with motif4097.7
Percentage of Background Sequences with motif19.25%
Average Position of motif in Targets446.6 +/- 352.6bp
Average Position of motif in Background277.9 +/- 216.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

IME1/MA0320.1/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:CTMSGCGG
CTCGGCGG

IME1(MacIsaac)/Yeast

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CTMSGCGG
CTCGGCGG

PDR3/Literature(Harbison)/Yeast

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTMSGCGG-
-TCCGCGGA

PDR3/MA0353.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTMSGCGG-
-TCCGCGGA

PDR3(MacIsaac)/Yeast

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTMSGCGG-
-TCCGCGGA

CHA4/MA0283.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTMSGCGG
TCTCCGCC-

HAL9/MA0311.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTMSGCGG
TTCCG---

PDR1/MA0352.1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTMSGCGG-
-TCCGCGGA

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTMSGCGG
GCTCCG---

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTMSGCGG-
GGCTCAGCGCG