Information for 14-AGAGAGAG (Motif 12)


Reverse Opposite:

p-value:1e-24
log p-value:-5.560e+01
Information Content per bp:1.800
Number of Target Sequences with motif437.0
Percentage of Target Sequences with motif10.08%
Number of Background Sequences with motif1286.6
Percentage of Background Sequences with motif6.04%
Average Position of motif in Targets389.7 +/- 316.7bp
Average Position of motif in Background267.4 +/- 198.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:forward strand
Alignment:AGAGAGAG
RGAGAGAG

SeqBias: GA-repeat

Match Rank:2
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGAG-
GAGAGAGAGA

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:3
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--AGAGAGAG
RGAGAGAGAG

Trl/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.85
Offset:1
Orientation:forward strand
Alignment:AGAGAGAG---
-GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:5
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:AGAGAGAG---
-GAGAGAGCAA

Trl/dmmpmm(Down)/fly

Match Rank:6
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGAG---
GAGAGAGAGAGC

Trl/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:AGAGAGAG-----
AGAGAGAGAGNAA

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGAG------
GAGAGAGARAGARAG

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGAG---
GAGAGAGAGAGCAA

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGAGAGAG-
GAAAGTGAAAGT