Information for 3-RAAAAAAA (Motif 3)


Reverse Opposite:

p-value:1e-101
log p-value:-2.327e+02
Information Content per bp:1.879
Number of Target Sequences with motif1693.0
Percentage of Target Sequences with motif39.06%
Number of Background Sequences with motif5184.4
Percentage of Background Sequences with motif24.35%
Average Position of motif in Targets388.5 +/- 333.4bp
Average Position of motif in Background275.1 +/- 196.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.51
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hb/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:RAAAAAAA
-AAAAAA-

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:2
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----RAAAAAAA-
TACTGGAAAAAAAA

hb/dmmpmm(Down)/fly

Match Rank:3
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-RAAAAAAA
CATAAAAAA

PB0182.1_Srf_2/Jaspar

Match Rank:4
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----RAAAAAAA-----
GTTAAAAAAAAAAATTA

hb/MA0049.1/Jaspar

Match Rank:5
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--RAAAAAAA
GCATAAAAAA

hb/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:RAAAAAAA
ATAAAAAA

hb/dmmpmm(Noyes)/fly

Match Rank:7
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--RAAAAAAA--
ACNAAAAAAACA

hb/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-RAAAAAAA
CATAAAAAA

SeqBias: polyA-repeat

Match Rank:9
Score:0.84
Offset:0
Orientation:forward strand
Alignment:RAAAAAAA--
AAAAAAAAAA

hb/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-RAAAAAAA
CAAAAAAA-