Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/It_300_S5_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4423
Total background sequences = 21024
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-227	-5.249e+02	26.68%	9.67%	305.5bp (215.3bp)	REB1(MacIsaac)/Yeast(0.993) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-82	-1.903e+02	42.70%	29.02%	329.7bp (207.0bp)	PB0182.1_Srf_2/Jaspar(0.898) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-72	-1.664e+02	27.25%	16.46%	329.4bp (238.3bp)	RSC30/MA0375.1/Jaspar(0.958) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-70	-1.633e+02	23.93%	13.86%	353.6bp (214.1bp)	IME1/MA0320.1/Jaspar(0.912) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-64	-1.492e+02	26.75%	16.56%	343.5bp (227.7bp)	SWI6(MacIsaac)/Yeast(0.768) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-49	-1.148e+02	6.31%	2.26%	290.6bp (212.5bp)	TYE7(MacIsaac)/Yeast(0.995) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-42	-9.766e+01	40.93%	31.14%	342.8bp (202.5bp)	TATA-box/SacCer-Promoters/Homer(0.877) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-38	-8.857e+01	19.90%	12.88%	365.9bp (235.4bp)	SP1/MA0079.3/Jaspar(0.836) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-35	-8.222e+01	14.93%	9.05%	313.2bp (203.4bp)	FHL1(MacIsaac)/Yeast(0.746) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-30	-6.926e+01	8.73%	4.66%	351.0bp (246.2bp)	SeqBias: CA-repeat(0.870) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-29	-6.896e+01	5.95%	2.71%	282.1bp (193.4bp)	OPI1/Literature(Harbison)/Yeast(0.822) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-25	-5.905e+01	5.13%	2.35%	277.9bp (219.0bp)	PB0044.1_Mtf1_1/Jaspar(0.845) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-24	-5.645e+01	16.92%	11.64%	337.9bp (195.8bp)	Trl/dmmpmm(Pollard)/fly(0.817) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-20	-4.697e+01	9.48%	5.89%	257.9bp (186.0bp)	Optix/dmmpmm(Noyes_hd)/fly(0.721) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-16	-3.847e+01	23.59%	18.51%	336.6bp (178.0bp)	SFP1/SacCer-Promoters/Homer(0.845) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-15	-3.529e+01	5.22%	2.96%	315.3bp (178.4bp)	TRB2/MA1073.1/Jaspar(0.645) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-14	-3.425e+01	5.59%	3.26%	276.9bp (208.8bp)	NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast(0.787) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-12	-2.870e+01	14.38%	10.87%	317.6bp (191.9bp)	SOX9/MA0077.1/Jaspar(0.695) More Information \| Similar Motifs Found	motif file (matrix)