Information for 4-CCGCSSAG (Motif 4)


Reverse Opposite:

p-value:1e-70
log p-value:-1.633e+02
Information Content per bp:1.548
Number of Target Sequences with motif1058.0
Percentage of Target Sequences with motif23.93%
Number of Background Sequences with motif2913.0
Percentage of Background Sequences with motif13.86%
Average Position of motif in Targets447.0 +/- 353.6bp
Average Position of motif in Background284.4 +/- 214.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

IME1/MA0320.1/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CCGCSSAG
CCGCCGAG

IME1(MacIsaac)/Yeast

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CCGCSSAG
CCGCCGAG

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CCGCSSAG--
CGCGCTGAGCN

CDC5/MA0579.1/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CCGCSSAG--
CGCGCTGAGCN

SUT1/MA0399.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCGCSSAG
-CGCGGGG

CHA4/MA0283.1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCGCSSAG-
-GGCGGAGA

RIM101/MA0368.1/Jaspar

Match Rank:7
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCGCSSAG
-CGCCAAG

SUT1(MacIsaac)/Yeast

Match Rank:8
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCGCSSAG
-CGCGGGG

PDR3/Literature(Harbison)/Yeast

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCGCSSAG
TCCGCGGA-

PDR3/MA0353.1/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCGCSSAG
TCCGCGGA-