Information for 23-AAGGGCCC (Motif 17)


Reverse Opposite:

p-value:1e-14
log p-value:-3.425e+01
Information Content per bp:1.904
Number of Target Sequences with motif247.0
Percentage of Target Sequences with motif5.59%
Number of Background Sequences with motif685.5
Percentage of Background Sequences with motif3.26%
Average Position of motif in Targets348.3 +/- 276.9bp
Average Position of motif in Background276.9 +/- 208.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:AAGGGCCC
-AGGGTCC

NRG1(MacIsaac)/Yeast

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:AAGGGCCC
-AGGGTCC

OJ1581_H09.2/MA1031.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AAGGGCCC--
GTGGGCCCAC

OsI_08196/MA1050.1/Jaspar

Match Rank:4
Score:0.75
Offset:2
Orientation:forward strand
Alignment:AAGGGCCC--
--GGGCCCAC

NRG1/MA0347.1/Jaspar

Match Rank:5
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------AAGGGCCC------
CTAGATCAGGGTCCATCGCA

TCP23/MA1066.1/Jaspar

Match Rank:6
Score:0.74
Offset:2
Orientation:forward strand
Alignment:AAGGGCCC--
--GGGCCCAC

TCP15/MA1062.1/Jaspar

Match Rank:7
Score:0.74
Offset:2
Orientation:forward strand
Alignment:AAGGGCCC--
--GGGCCCAC

PCF5(TCP)/Oryza sativa/AthaMap

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AAGGGCCC--
NNGGGACCAC

MSN2(MacIsaac)/Yeast

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AAGGGCCC
AAGGGGC-

TCP2/MA1064.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAGGGCCC--
GTGGGCCCAC