Information for 18-GAGWGAGG (Motif 13)


Reverse Opposite:

p-value:1e-24
log p-value:-5.645e+01
Information Content per bp:1.827
Number of Target Sequences with motif748.0
Percentage of Target Sequences with motif16.92%
Number of Background Sequences with motif2447.3
Percentage of Background Sequences with motif11.64%
Average Position of motif in Targets424.3 +/- 337.9bp
Average Position of motif in Background286.1 +/- 195.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GAGWGAGG--
GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:2
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GAGWGAGG--
GAGAGAGCAA

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:3
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GAGWGAGG
RGAGAGAG-

SeqBias: GA-repeat

Match Rank:4
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GAGWGAGG--
GAGAGAGAGA

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:5
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---GAGWGAGG
RGAGAGAGAG-

Trl/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GAGWGAGG----
AGAGAGAGAGNAA

Trl/dmmpmm(Down)/fly

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GAGWGAGG--
GAGAGAGAGAGC

z/dmmpmm(Down)/fly

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAGWGAGG
TGAGTG---

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GAGWGAGG--
GAGAGAGAGAGCAA

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGWGAGG-
GGGCGGGAAGG