Information for 17-GCACACGG (Motif 12)


Reverse Opposite:

p-value:1e-25
log p-value:-5.905e+01
Information Content per bp:1.906
Number of Target Sequences with motif227.0
Percentage of Target Sequences with motif5.13%
Number of Background Sequences with motif494.3
Percentage of Background Sequences with motif2.35%
Average Position of motif in Targets473.8 +/- 277.9bp
Average Position of motif in Background290.8 +/- 219.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0044.1_Mtf1_1/Jaspar

Match Rank:1
Score:0.84
Offset:-5
Orientation:reverse strand
Alignment:-----GCACACGG---
NNTTTGCACACGGCCC

MTF1/MA0863.1/Jaspar

Match Rank:2
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---GCACACGG---
TTTGCACACGGCAC

Myc/MA0147.2/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GCACACGG
AAGCACATGG

CMTA3/MA0970.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCACACGG
NNNACGCGG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCACACGG
CCAGGAACAG--

AFT2(MacIsaac)/Yeast

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCACACGG
TGCACCC--

CMTA2/MA0969.1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GCACACGG---
--ACGCGGNNN

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCACACGG----
CGAAGCACACAAAATA

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCACACGG----
AGCGGCACACACGCAA

AFT2/AFT2_H2O2Lo/10-RCS1[~AFT2](Harbison)/Yeast

Match Rank:10
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCACACGG
GCACCC--