# Parameters
data_name = "Six4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Six4: #4
| Cell type | Modisco | Homer |
|---|---|---|
| SKLTL_Muscle;8wks;D;En |
Significance: 2.37989e-05 |
Significance: 0.000391535 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 2.66946e-05 |
Significance: 0.000133311 |
| wES;FaceP;E14.5;D;En |
Significance: 6.7753e-05 |
Significance: 0.000942349 |
| Muscle;A;CL |
Significance: 3.6788300000000002e-06 |
Significance: 0.00420289 |
Unique Cell types only TF-MoDISco finds Six4: #57
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.000214847 | Absent |
| wES;limb;E11.5;D;En |
Significance: 1.55201e-05 | Absent |
| wES;Fr_lmb;E11.5;D;En |
Significance: 1.1759300000000001e-05 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 2.65029e-05 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 2.53659e-05 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 2.17531e-05 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 1.0623399999999999e-05 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 4.82591e-05 | Absent |
| NIH3T3;D;En |
Significance: 9.94582e-06 | Absent |
| ENDRM_ESD;A;GEO |
Significance: 8.0197e-07 | Absent |
| 3T3-L1;D;En |
Significance: 0.000255501 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.000330903 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 1.63378e-05 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 2.69952e-06 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 2.43878e-05 | Absent |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 1.2566600000000001e-05 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 1.7247899999999998e-05 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 1.85279e-05 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 3.7057e-05 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 3.46046e-05 | Absent |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.000118664 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 8.644459999999999e-07 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 1.02134e-06 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.00011470799999999999 | Absent |
| NPC;F129;A;GEO |
Significance: 5.09606e-05 | Absent |
| ES;E14;A;CL |
Significance: 7.05439e-06 | Absent |
| ES;MEF;A;CL |
Significance: 6.28325e-05 | Absent |
| Corticotrope;A;GEO |
Significance: 9.52051e-05 | Absent |
| Melanotrope;A;GEO |
Significance: 0.00010413200000000001 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 6.26792e-05 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 1.1076799999999999e-06 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 9.523899999999999e-07 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 7.01013e-05 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 2.97412e-05 | Absent |
| PNCRS;A;CL |
Significance: 0.0101551 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 9.784950000000001e-07 | Absent |
| ES;D0;D;GEO |
Significance: 2.95108e-05 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.00033983 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 2.90741e-05 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 8.7294e-06 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.000348846 | Absent |
| ES;E14;D;En |
Significance: 5.71981e-07 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 7.08555e-05 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 0.0013658 | Absent |
| FBRBLST;8wks;D;En |
Significance: 9.994129999999999e-05 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 1.13282e-05 | Absent |
| KDNY;P0;D;En |
Significance: 0.000674665 | Absent |
| ES;J1;A;CL |
Significance: 1.81503e-07 | Absent |
| ES;E14;A;GEO |
Significance: 0.000101766 | Absent |
| ES;F1216;A;GEO |
Significance: 8.54052e-06 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 1.30879e-06 | Absent |
| ES;v6.5;A;GEO |
Significance: 1.59502e-06 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 9.80564e-05 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 1.6419799999999998e-06 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 1.43307e-05 | Absent |
| Muller;P12;D;En |
Significance: 0.000868485 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.00031659900000000004 | Absent |
