In [1]:
# Parameters
data_name = "Myog"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:21:29,112 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Myog: Motif: M09469_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Myog: #32

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.048494699999999995

Pattern: motif5.motif

Significance: 0.00593794

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00770948

Pattern: motif12.motif

Significance: 0.026376099999999996

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.059864099999999996

Pattern: motif5.motif

Significance: 0.00966017

proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.00177886

Pattern: motif15.motif

Significance: 0.0590737

preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00740168

Pattern: motif12.motif

Significance: 0.058359900000000006

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00377572

Pattern: motif15.motif

Significance: 0.0241832

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.00200463

Pattern: motif10.motif

Significance: 0.00738291

prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.040053500000000006

/

Pattern: metacluster_1/pattern_21

Significance: 0.013988399999999998

Pattern: motif22.motif

Significance: 0.0409791

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.00143284

Pattern: motif9.motif

Significance: 0.0514538

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0019346

Pattern: motif9.motif

Significance: 0.00215247

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00453427

/

Pattern: metacluster_1/pattern_18

Significance: 0.056677899999999996

Pattern: motif11.motif

Significance: 0.014593700000000001

largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.030566500000000003

Pattern: motif18.motif

Significance: 0.0542178

smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.029954400000000003

Pattern: motif13.motif

Significance: 0.017336700000000003

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.027005599999999998

Pattern: motif10.motif

Significance: 0.0158857

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0155791

Pattern: motif9.motif

Significance: 0.00294631

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0167169

Pattern: motif13.motif

Significance: 0.00567272

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00753281

Pattern: motif11.motif

Significance: 0.013184

DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0326546

Pattern: motif17.motif

Significance: 0.0407856

iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.0388915

Pattern: motif3.motif

Significance: 0.019088099999999997

DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0485564

Pattern: motif7.motif

Significance: 0.0585529

ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00711635

Pattern: motif14.motif

Significance: 0.0236284

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0115219

Pattern: motif5.motif

Significance: 0.019644799999999997

Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.00276755

Pattern: motif19.motif

Significance: 0.013110499999999999

Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.029352299999999998

Pattern: motif13.motif

Significance: 0.0230399

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.05897859999999999

/

Pattern: metacluster_1/pattern_10

Significance: 0.00485827

Pattern: motif2.motif

Significance: 0.0507829

KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0156661

Pattern: motif15.motif

Significance: 0.00164288

LNG;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.00202781

Pattern: motif18.motif

Significance: 0.033139

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00143385

Pattern: motif13.motif

Significance: 0.00665426

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00532126

Pattern: motif2.motif

Significance: 0.00795206

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.016343100000000003

Pattern: motif16.motif

Significance: 0.013178

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0165947

Pattern: motif4.motif

Significance: 0.00926239

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0156993

Pattern: motif19.motif

Significance: 0.0413039

Unique Cell types only TF-MoDISco finds Myog: #38

Cell typeModiscoHomer
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0271942

Absent
B1_B;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.0349068

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.059693399999999994

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00111234

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.00675922

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 9.16633e-05

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0038459

/

Pattern: metacluster_0/pattern_22

Significance: 0.0369166

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0452741

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0105734

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0016713000000000001

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00139833

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.010775100000000001

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.006326300000000001

Absent
ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0253993

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.055333600000000004

Absent
eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.057886900000000005

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.00303249

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.00563605

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00836835

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.0101618

Absent
BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.036245400000000004

Absent
BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.0356887

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.05174259999999999

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.00808333

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0101574

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.00344459

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0229797

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00387334

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0166493

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.038711699999999995

/

Pattern: metacluster_1/pattern_15

Significance: 0.00329302

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00462405

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00497956

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.00666601

/

Pattern: metacluster_0/pattern_12

Significance: 0.0495195

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0132233

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0210485

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.011187899999999999

/

Pattern: metacluster_1/pattern_6

Significance: 0.041408600000000004

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0412116

/

Pattern: metacluster_1/pattern_11

Significance: 0.029608699999999998

Absent
wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0304255

Absent
Unique Cell types only Homer finds Myog: #2

Cell typeModiscoHomer
wES;FaceP;E11.5;D;EnAbsent

Pattern: motif7.motif

Significance: 0.0175865

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.00959585