Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/It_3_S27_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4171
Total background sequences = 21499
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-226	-5.208e+02	27.09%	9.62%	284.7bp (194.5bp)	REB1(MacIsaac)/Yeast(0.993) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-99	-2.280e+02	42.38%	27.13%	323.8bp (231.9bp)	RSC30/MA0375.1/Jaspar(0.866) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-85	-1.964e+02	31.57%	18.84%	319.3bp (199.3bp)	EDS1/MA0294.1/Jaspar(0.851) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-59	-1.362e+02	10.19%	4.23%	301.4bp (206.1bp)	CBF1(MacIsaac)/Yeast(0.996) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-50	-1.153e+02	36.10%	25.61%	352.1bp (196.0bp)	TATA-box/SacCer-Promoters/Homer(0.898) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-39	-9.162e+01	12.90%	7.06%	377.1bp (219.8bp)	IME1/MA0320.1/Jaspar(0.877) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-36	-8.472e+01	8.89%	4.33%	405.3bp (215.0bp)	SeqBias: CA-repeat(0.870) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-34	-7.986e+01	13.23%	7.66%	409.4bp (194.4bp)	CHA4(MacIsaac)/Yeast(0.928) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-31	-7.249e+01	13.78%	8.32%	298.4bp (223.4bp)	ERF105/MA1000.1/Jaspar(0.785) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-30	-7.062e+01	7.60%	3.73%	389.0bp (205.7bp)	FHL1(MacIsaac)/Yeast(0.796) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-28	-6.619e+01	24.21%	17.33%	350.0bp (219.1bp)	Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.925) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-24	-5.717e+01	3.88%	1.53%	439.2bp (203.5bp)	RDS1/RDS1_H2O2Hi/[](Harbison)/Yeast(0.779) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-21	-5.040e+01	4.70%	2.17%	260.7bp (202.2bp)	OPI1/Literature(Harbison)/Yeast(0.917) More Information \| Similar Motifs Found	motif file (matrix)
14 *		1e-11	-2.702e+01	21.21%	17.04%	322.9bp (182.9bp)	NFATC3/MA0625.1/Jaspar(0.810) More Information \| Similar Motifs Found	motif file (matrix)
15 *		1e-11	-2.678e+01	23.13%	18.83%	317.6bp (185.7bp)	Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer(0.676) More Information \| Similar Motifs Found	motif file (matrix)
16 *		1e-11	-2.608e+01	5.80%	3.65%	353.2bp (187.8bp)	CEP3/MA0282.1/Jaspar(0.655) More Information \| Similar Motifs Found	motif file (matrix)