Information for 7-CCGCGGAG (Motif 6)


Reverse Opposite:

p-value:1e-39
log p-value:-9.162e+01
Information Content per bp:1.649
Number of Target Sequences with motif538.0
Percentage of Target Sequences with motif12.90%
Number of Background Sequences with motif1519.4
Percentage of Background Sequences with motif7.06%
Average Position of motif in Targets471.9 +/- 377.1bp
Average Position of motif in Background266.8 +/- 219.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

IME1/MA0320.1/Jaspar

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CCGCGGAG
CCGCCGAG

IME1(MacIsaac)/Yeast

Match Rank:2
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCGCGGAG
CCGCCGAG

PDR1/MA0352.1/Jaspar

Match Rank:3
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-CCGCGGAG
TCCGCGGA-

PDR3/Literature(Harbison)/Yeast

Match Rank:4
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CCGCGGAG
TCCGCGGA-

PDR3(MacIsaac)/Yeast

Match Rank:5
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CCGCGGAG
TCCGCGGA-

PDR3/MA0353.1/Jaspar

Match Rank:6
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CCGCGGAG
TCCGCGGA-

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CCGCGGAG--
CGCGCTGAGCN

CDC5/MA0579.1/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CCGCGGAG--
CGCGCTGAGCN

SUT1(MacIsaac)/Yeast

Match Rank:9
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CCGCGGAG
-CGCGGGG

SUT1/MA0399.1/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCGCGGAG
-CGCGGGG